Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   FTN78_RS08110 Genome accession   NZ_CP043523
Coordinates   1575033..1576475 (+) Length   480 a.a.
NCBI ID   WP_010905315.1    Uniprot ID   Q9CIG6
Organism   Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1570033..1581475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTN78_RS08075 (FTN78_chr1602) - 1570237..1570428 (+) 192 WP_003131566.1 hypothetical protein -
  FTN78_RS08080 (FTN78_chr1603) rsmI 1570505..1571380 (-) 876 WP_010905318.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FTN78_RS08085 (FTN78_chr1604) yabA 1571380..1571706 (-) 327 WP_010905317.1 DNA replication initiation control protein YabA -
  FTN78_RS08090 (FTN78_chr1605) yaaT 1571699..1572481 (-) 783 WP_010905316.1 stage 0 sporulation family protein Regulator
  FTN78_RS08095 (FTN78_chr1606) - 1572533..1573393 (-) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  FTN78_RS08100 (FTN78_chr1607) tmk 1573526..1574161 (-) 636 WP_003131575.1 dTMP kinase -
  FTN78_RS08105 (FTN78_chr1608) yycF 1574339..1575040 (+) 702 WP_003131580.1 response regulator YycF -
  FTN78_RS08110 (FTN78_chr1609) vicK 1575033..1576475 (+) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  FTN78_RS08115 (FTN78_chr1610) vicX 1576646..1577458 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  FTN78_RS08120 (FTN78_chr1611) groL 1577504..1579132 (-) 1629 WP_003131585.1 chaperonin GroEL -
  FTN78_RS08125 (FTN78_chr1612) groES 1579220..1579504 (-) 285 WP_003131589.1 co-chaperone GroES -
  FTN78_RS08130 (FTN78_chr1613) ssbB 1579624..1580013 (-) 390 WP_010905314.1 single-stranded DNA-binding protein Machinery gene
  FTN78_RS08135 (FTN78_chr1614) nox 1580103..1581443 (-) 1341 WP_021214845.1 H2O-forming NADH oxidase -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54695.14 Da        Isoelectric Point: 4.5889

>NTDB_id=338042 FTN78_RS08110 WP_010905315.1 1575033..1576475(+) (vicK) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
MIKFFNSMIFKGVVAHLLLFVILFMSSFDYNFAHLSTFIGYYLFSLVFVLVFLNQQHRMIVNVSKQMNDIKNGYLNRDKI
PKGTSEINELYDEILKLGEDIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMQKNIVE
VLKITDQYNFYDLLEKEPEITIETHDSGNESISLHIKFALFRRESGFISGIIAVLHDMTEQDKAERERRLFVSNVSHELR
TPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQIL
ETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDL
LKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLPYSLEAADDWDDGTDEFEFEDNE

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=338042 FTN78_RS08110 WP_010905315.1 1575033..1576475(+) (vicK) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
ATGATTAAATTTTTTAATTCAATGATTTTTAAAGGAGTAGTTGCACACCTACTTCTTTTTGTCATCCTTTTTATGAGCAG
TTTTGATTACAATTTTGCTCATTTAAGTACTTTTATTGGTTATTACTTATTTTCACTCGTCTTTGTTTTAGTCTTTCTCA
ATCAGCAACATCGCATGATTGTGAATGTTTCTAAACAGATGAATGACATAAAAAATGGCTATTTAAATCGCGATAAAATC
CCAAAAGGGACGAGTGAAATCAATGAATTATATGATGAAATTTTAAAACTTGGTGAAGATATTGTTCGCACGCAGAACAA
TCTTGAAAATCAGCGTAATCAATTAGATAGTATTCTCGCATATATGGTTGATGGCGTCATTGCCACCGATCGTCGTGGAA
ATATTATTATGGCCAATAAATCAGCTTTGCACTATTTGAATACAGATAATGATCTCTTGATGCAAAAAAATATTGTTGAA
GTTTTAAAAATTACTGACCAATATAATTTTTATGATTTATTAGAAAAAGAACCTGAAATAACTATTGAGACACATGATTC
TGGGAATGAATCCATTTCGCTCCACATTAAATTTGCCCTCTTTCGTCGTGAATCTGGTTTCATCTCAGGAATTATTGCCG
TCTTACATGATATGACTGAACAAGACAAGGCCGAACGAGAGCGCCGTCTCTTTGTTTCCAATGTTTCTCATGAACTCCGA
ACTCCGCTCACCTCAGTAAAAGCCTACTTGGAAGCACTAGAAGACGGAGCCATTGAGGATAAAGAAACAGCTTCATCCTT
TATTAATGTTTCACTTACTGAAACTAATCGGATGATTCGAATGATTTCCGACCTTTTGACTTTATCAAGAATGGATCAAG
ACCGAATCGTTCTTAATAAAGAAATGATTAATTTAATTGCCTTCTTAGACTATCAAATTAACCGTTTAGACCAAATTTTA
GAAACCGAATCAAACGATTTAATCTCTTCTAATTTCACTCTAGTCAGAAAATACTCTGAACAGCCCATCTGGGTCGAAAT
TGATACCGATAAAATTGCTCAAGTCATTGACAATATCATCGGAAATGCAATTAAGTATTCACCTAAAGGTGGAACTATTA
CAATTTCCGTTGAAAAACGTGAAAGTGATGTTCTAATCTCCATCAGTGACCAAGGAATGGGGATTCCAAAATCTGATTTA
CTTAAGATTTTTGACCGTTTCTACCGAGTTGATAATGCTTCAAGAAATTCAAAAGTTGGGGGGACAGGTTTAGGCCTCTC
TATTGTCCATGATATTGTTAAAATACATGGCGGAACAATTTTTGCAAGTTCTGAAGGAGAAGGAAAAGGAACGACCTTTA
GTTTCACTCTTCCATATTCTTTAGAAGCCGCAGATGACTGGGATGATGGCACTGATGAGTTTGAATTTGAGGATAATGAA
TAA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(348-459)

PAS domain (PAS_9)

(124-220)

His Kinase A (phospho-acceptor) domain (HisKA)

(228-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

51.559

86.875

0.448
  micB Streptococcus pneumoniae Cp1015

47.748

92.5

0.442

Multiple sequence alignment