Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FQT78_RS17270 Genome accession   NZ_CP043487
Coordinates   3561655..3562287 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain AQ15     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3556655..3567287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT78_RS17245 (FQT78_17510) yheS 3556824..3558737 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  FQT78_RS17250 (FQT78_17515) yheT 3558737..3559759 (+) 1023 WP_000057346.1 hydrolase -
  FQT78_RS17255 (FQT78_17520) yheU 3559753..3559971 (+) 219 WP_000907085.1 YheU family protein -
  FQT78_RS17260 (FQT78_17525) prkB 3560025..3560894 (+) 870 WP_001274680.1 phosphoribulokinase -
  FQT78_RS17265 (FQT78_17530) yhfA 3560949..3561353 (-) 405 WP_001148908.1 OsmC family protein -
  FQT78_RS17270 (FQT78_17535) crp 3561655..3562287 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  FQT78_RS17275 (FQT78_17540) yhfK 3562338..3564428 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  FQT78_RS17280 (FQT78_17545) argD 3564495..3565715 (-) 1221 WP_000963797.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  FQT78_RS17285 (FQT78_17550) pabA 3565801..3566364 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  FQT78_RS17290 (FQT78_17555) fic 3566396..3566998 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  FQT78_RS17295 (FQT78_17560) yhfG 3566988..3567155 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=337971 FQT78_RS17270 WP_000242755.1 3561655..3562287(+) (crp) [Escherichia coli strain AQ15]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=337971 FQT78_RS17270 WP_000242755.1 3561655..3562287(+) (crp) [Escherichia coli strain AQ15]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment