Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   EQH31_RS09650 Genome accession   NZ_CP035249
Coordinates   1881554..1882564 (-) Length   336 a.a.
NCBI ID   WP_000990609.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901938     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1876554..1887564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH31_RS09620 (EQH31_10225) - 1876574..1877788 (-) 1215 WP_000666469.1 pyridoxal phosphate-dependent aminotransferase -
  EQH31_RS09625 (EQH31_10230) - 1877944..1878237 (-) 294 WP_000977374.1 hypothetical protein -
  EQH31_RS09630 (EQH31_10235) - 1878399..1878851 (+) 453 WP_000079148.1 universal stress protein -
  EQH31_RS09635 (EQH31_10240) - 1878886..1880274 (-) 1389 WP_000453139.1 Cof-type HAD-IIB family hydrolase -
  EQH31_RS09640 (EQH31_10245) - 1880340..1881302 (+) 963 WP_001124777.1 asparaginase -
  EQH31_RS09645 (EQH31_10250) - 1881299..1881490 (-) 192 WP_001092030.1 hypothetical protein -
  EQH31_RS09650 (EQH31_10255) ccpA 1881554..1882564 (-) 1011 WP_000990609.1 catabolite control protein A Regulator
  EQH31_RS09655 (EQH31_10260) - 1882989..1883588 (-) 600 WP_000866724.1 response regulator transcription factor -
  EQH31_RS09660 (EQH31_10265) - 1883589..1884686 (-) 1098 WP_000893522.1 sensor histidine kinase -
  EQH31_RS09665 (EQH31_10270) - 1884686..1885423 (-) 738 WP_000832833.1 ABC transporter permease -
  EQH31_RS09670 (EQH31_10275) - 1885425..1886304 (-) 880 Protein_1914 ABC transporter ATP-binding protein -
  EQH31_RS09675 (EQH31_10280) - 1886291..1886485 (-) 195 WP_000709198.1 hypothetical protein -
  EQH31_RS09680 (EQH31_10285) - 1886482..1886688 (-) 207 WP_001818960.1 hypothetical protein -

Sequence


Protein


Download         Length: 336 a.a.        Molecular weight: 37101.07 Da        Isoelectric Point: 5.3212

>NTDB_id=337698 EQH31_RS09650 WP_000990609.1 1881554..1882564(-) (ccpA) [Streptococcus pneumoniae strain TVO_1901938]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIYMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLAKENERIAFVSGPLVDDINGKVRLVGYKETLKKVGITYSEGLVFESKYSYDDGYALAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEDFEIITSDDSQISRFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERSSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=337698 EQH31_RS09650 WP_000990609.1 1881554..1882564(-) (ccpA) [Streptococcus pneumoniae strain TVO_1901938]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGTTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACCACTGTCGGTGTCGTGATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCTAAGGGGATTGATGATATTGCAGAAATGTACAAGTACAATATTGTCCTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTATATGGGTTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGTTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCAAGT
GTCAATATTGACTATAAGCAAGCAACAATTGATGCAGTGAGCTACCTTGCTAAAGAAAATGAGCGTATTGCTTTCGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAACCTTGAAAAAAGTAGGAATCACTT
ATAGTGAGGGTTTGGTATTTGAATCTAAATATAGCTATGATGATGGTTACGCCTTAGCAGAGCGTTTGATTTCATCAAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGAGTCTTGAACGGTTTGGCTGATAAGGGTGTTTCTGTGCC
AGAAGATTTTGAAATTATTACTAGTGATGATTCACAAATCTCACGCTTTACCCGTCCAAACTTGACAACGATTGCCCAAC
CTCTTTATGACCTTGGTGCCATTAGTATGCGTATGTTGACCAAGATTATGCATAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAACGTAGCTCAACACGAAAACGTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

99.405

100

0.994

  ccpA Streptococcus gordonii str. Challis substr. CH1

87.126

99.405

0.866

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.402

98.512

0.565


Multiple sequence alignment