Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LHK_RS10080 Genome accession   NC_012559
Coordinates   2104727..2105518 (-) Length   263 a.a.
NCBI ID   WP_012697689.1    Uniprot ID   C1DA88
Organism   Laribacter hongkongensis HLHK9     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099727..2110518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHK_RS10050 (LHK_02213) - 2100328..2101809 (+) 1482 WP_012697683.1 aldehyde dehydrogenase -
  LHK_RS10055 (LHK_02214) - 2101875..2102210 (+) 336 WP_012697684.1 rhodanese-like domain-containing protein -
  LHK_RS10060 (LHK_02215) - 2102243..2102548 (+) 306 WP_012697685.1 helix-turn-helix transcriptional regulator -
  LHK_RS10065 (LHK_02216) - 2102613..2102957 (+) 345 WP_012697686.1 carboxymuconolactone decarboxylase family protein -
  LHK_RS10070 (LHK_02217) - 2103064..2103906 (+) 843 WP_012697687.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  LHK_RS10075 (LHK_02218) - 2103899..2104660 (-) 762 WP_012697688.1 YdcF family protein -
  LHK_RS10080 (LHK_02219) comL 2104727..2105518 (-) 792 WP_012697689.1 outer membrane protein assembly factor BamD Machinery gene
  LHK_RS10085 (LHK_02220) rluD 2105517..2106566 (+) 1050 WP_012697690.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LHK_RS10090 (LHK_02221) pgeF 2106571..2107302 (+) 732 WP_012697691.1 peptidoglycan editing factor PgeF -
  LHK_RS10095 (LHK_02222) - 2107304..2107849 (+) 546 WP_012697692.1 DUF2946 family protein -
  LHK_RS10100 (LHK_02223) - 2108096..2108305 (+) 210 WP_012697693.1 cold-shock protein -
  LHK_RS10105 (LHK_02224) - 2108638..2109381 (-) 744 WP_012697694.1 amino acid ABC transporter permease -
  LHK_RS10110 (LHK_02225) - 2109454..2110269 (-) 816 WP_012697695.1 basic amino acid ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30426.51 Da        Isoelectric Point: 7.9683

>NTDB_id=33755 LHK_RS10080 WP_012697689.1 2104727..2105518(-) (comL) [Laribacter hongkongensis HLHK9]
MKKIAVMMLMAAWLAGCSTTSEPADETRGWTVEKLYSEARDELNSGNYTRAIKLYETLEARYPYGRYAQQAQMDLAYAHF
KDQEPALSLAAADRFIKLHPAHPNVDYVYYLKGLVNYNEDGGILSKYTGQDRAERDPKAAREAFTSFRDLVVRFPDSRYA
PDARVKMQNLVDGLAEHELFVARYYMRRSAYLAAANRAQGMIKEFPDSPFVEESFAIMVTAYDKLGKTTLRDDTRRVLET
NFPNSVYLKKPWQPRDVPWYQFW

Nucleotide


Download         Length: 792 bp        

>NTDB_id=33755 LHK_RS10080 WP_012697689.1 2104727..2105518(-) (comL) [Laribacter hongkongensis HLHK9]
ATGAAAAAAATCGCGGTAATGATGCTGATGGCGGCTTGGCTTGCCGGGTGTTCGACCACCTCCGAGCCAGCGGACGAGAC
GCGCGGCTGGACGGTCGAAAAACTCTATTCCGAGGCGCGCGACGAGCTGAATAGTGGAAATTATACGCGGGCGATCAAGC
TCTACGAAACGCTCGAAGCGCGTTATCCGTATGGCCGTTATGCCCAGCAGGCGCAGATGGACCTCGCCTACGCGCACTTC
AAGGACCAGGAACCGGCCTTGTCGCTGGCCGCTGCCGACCGCTTCATCAAGCTGCACCCGGCGCACCCGAACGTTGACTA
CGTTTACTACCTCAAGGGACTGGTCAACTACAACGAAGACGGCGGCATCCTGTCCAAATACACCGGTCAGGACCGGGCCG
AGCGTGATCCAAAGGCCGCGCGCGAGGCCTTTACCTCTTTCCGTGATCTGGTCGTGCGCTTCCCGGACAGCAGGTATGCC
CCGGATGCCCGGGTGAAAATGCAGAACCTCGTCGACGGCCTGGCCGAACACGAGCTCTTCGTTGCGCGCTATTACATGCG
CCGCAGCGCCTATCTGGCAGCCGCAAACCGTGCCCAGGGCATGATCAAGGAATTCCCGGATTCGCCGTTTGTCGAAGAAT
CCTTCGCCATCATGGTGACGGCCTACGACAAGCTCGGCAAAACCACCCTGCGCGACGATACCCGCCGGGTGCTGGAAACC
AACTTCCCCAACAGCGTCTACCTGAAAAAGCCGTGGCAGCCGCGTGACGTGCCGTGGTACCAGTTCTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DA88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

55.263

100

0.559
  comL Neisseria gonorrhoeae MS11

54.135

100

0.548

Multiple sequence alignment