Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FZ921_RS00600 Genome accession   NZ_CP043458
Coordinates   134128..134799 (-) Length   223 a.a.
NCBI ID   WP_052799711.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 18WIARLN0024     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 129128..139799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZ921_RS00590 (FZ921_00585) - 132354..132971 (+) 618 Protein_112 SRPBCC family protein -
  FZ921_RS00600 (FZ921_00595) crp 134128..134799 (-) 672 WP_052799711.1 cAMP-activated global transcriptional regulator CRP Regulator
  FZ921_RS00605 (FZ921_00600) - 135174..136264 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  FZ921_RS00610 (FZ921_00605) - 136283..139327 (+) 3045 Protein_116 outer membrane lipoprotein-sorting protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25213.08 Da        Isoelectric Point: 8.4691

>NTDB_id=337542 FZ921_RS00600 WP_052799711.1 134128..134799(-) (crp) [Acinetobacter baumannii strain 18WIARLN0024]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTRQK

Nucleotide


Download         Length: 672 bp        

>NTDB_id=337542 FZ921_RS00600 WP_052799711.1 134128..134799(-) (crp) [Acinetobacter baumannii strain 18WIARLN0024]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGTCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGACAAAAATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

97.309

0.973
  crp Vibrio cholerae strain A1552

47.317

91.928

0.435
  crp Haemophilus influenzae Rd KW20

48.705

86.547

0.422

Multiple sequence alignment