Detailed information NTG0337140

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: EQH38_RS04660
• Genome accession: NZ_CP035242
• Coordinates: 869588..870058 (+)
• Length: 156 a.a.
• NCBI ID: WP_000609607.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain TVO_1901947
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 864588..875058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQH38_RS04630 (EQH38_04900)	-	864873..865421 (-)	549	WP_000039618.1	NADPH-dependent FMN reductase	-
EQH38_RS04635 (EQH38_04910)	-	865742..866230 (+)	489	WP_000747254.1	DUF5590 domain-containing protein	-
EQH38_RS04640 (EQH38_04915)	-	866227..867414 (+)	1188	WP_000777787.1	pyridoxal phosphate-dependent aminotransferase	-
EQH38_RS04645 (EQH38_04920)	-	867407..867772 (+)	366	WP_000565234.1	VOC family protein	-
EQH38_RS04650 (EQH38_04925)	asnS	867790..869133 (+)	1344	WP_000167150.1	asparagine--tRNA ligase	-
EQH38_RS04655 (EQH38_04930)	rpsF	869286..869576 (+)	291	WP_001151785.1	30S ribosomal protein S6	-
EQH38_RS04660 (EQH38_04935)	ssbA	869588..870058 (+)	471	WP_000609607.1	single-stranded DNA-binding protein SsbA	Machinery gene
EQH38_RS04665 (EQH38_04940)	rpsR	870090..870329 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
EQH38_RS04670 (EQH38_04945)	-	870624..872024 (+)	1401	WP_000339024.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
EQH38_RS04675 (EQH38_04950)	-	872026..872385 (+)	360	WP_000689597.1	S1 RNA-binding domain-containing protein	-
EQH38_RS04680 (EQH38_04955)	-	872439..873188 (+)	750	WP_000390784.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
EQH38_RS04685 (EQH38_04960)	-	873178..873477 (+)	300	WP_000349602.1	GIY-YIG nuclease family protein	-
EQH38_RS04690 (EQH38_04965)	-	873548..874483 (+)	936	WP_000036043.1	manganese-dependent inorganic pyrophosphatase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17351.21 Da
• Isoelectric Point: 5.2065

>NTDB_id=337140 EQH38_RS04660 WP_000609607.1 869588..870058(+) (ssbA) [Streptococcus pneumoniae strain TVO_1901947]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=337140 EQH38_RS04660 WP_000609607.1 869588..870058(+) (ssbA) [Streptococcus pneumoniae strain TVO_1901947]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATTAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.814	100	0.615
ssb	Latilactobacillus sakei subsp. sakei 23K	54.118	100	0.59
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.66	67.949	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssbB/cilA	Streptococcus pneumoniae TIGR4	53.211	69.872	0.372
ssbB/cilA	Streptococcus mitis SK321	52.294	69.872	0.365
ssbB/cilA	Streptococcus mitis NCTC 12261	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae Rx1	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae D39	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae R6	52.294	69.872	0.365