Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   EQH39_RS10210 Genome accession   NZ_CP035241
Coordinates   2000645..2001403 (+) Length   252 a.a.
NCBI ID   WP_000410377.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901948     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1995645..2006403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH39_RS10180 (EQH39_10690) comE 1996242..1996994 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  EQH39_RS10185 (EQH39_10695) comD/comD1 1996991..1998316 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  EQH39_RS10190 (EQH39_10700) comC/comC1 1998337..1998462 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  EQH39_RS10200 (EQH39_10710) rlmH 1998744..1999223 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EQH39_RS10205 (EQH39_10715) htrA 1999406..2000587 (+) 1182 WP_000681601.1 S1C family serine protease Regulator
  EQH39_RS10210 (EQH39_10720) spo0J 2000645..2001403 (+) 759 WP_000410377.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29110.47 Da        Isoelectric Point: 8.3000

>NTDB_id=337101 EQH39_RS10210 WP_000410377.1 2000645..2001403(+) (spo0J) [Streptococcus pneumoniae strain TVO_1901948]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEALAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=337101 EQH39_RS10210 WP_000410377.1 2000645..2001403(+) (spo0J) [Streptococcus pneumoniae strain TVO_1901948]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACT
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTTTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
ATTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508

Multiple sequence alignment