Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FZO34_RS06860 Genome accession   NZ_CP043417
Coordinates   1458677..1459342 (-) Length   221 a.a.
NCBI ID   WP_000203219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain N13-03449     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1453677..1464342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZO34_RS06845 (FZO34_06845) - 1456283..1456969 (+) 687 WP_001279997.1 glutathione S-transferase family protein -
  FZO34_RS06850 (FZO34_06850) - 1456977..1457510 (+) 534 Protein_1306 SDR family NAD(P)-dependent oxidoreductase -
  FZO34_RS06860 (FZO34_06860) crp 1458677..1459342 (-) 666 WP_000203219.1 cAMP-activated global transcriptional regulator CRP Regulator
  FZO34_RS19165 - 1459583..1459702 (+) 120 Protein_1309 hypothetical protein -
  FZO34_RS06865 (FZO34_06865) - 1459781..1460203 (+) 423 WP_001195082.1 OsmC family protein -
  FZO34_RS06870 (FZO34_06870) - 1460343..1461433 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  FZO34_RS06875 (FZO34_06875) - 1461451..1461687 (+) 237 Protein_1312 short-chain dehydrogenase -
  FZO34_RS06880 (FZO34_06880) - 1461697..1462380 (+) 684 WP_000920697.1 SDR family NAD(P)-dependent oxidoreductase -
  FZO34_RS06885 (FZO34_06885) - 1462458..1463015 (+) 558 WP_000932097.1 chorismate mutase -
  FZO34_RS06890 (FZO34_06890) - 1463044..1463529 (-) 486 WP_001089196.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24956.78 Da        Isoelectric Point: 8.1128

>NTDB_id=337096 FZO34_RS06860 WP_000203219.1 1458677..1459342(-) (crp) [Acinetobacter baumannii strain N13-03449]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=337096 FZO34_RS06860 WP_000203219.1 1458677..1459342(-) (crp) [Acinetobacter baumannii strain N13-03449]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

98.19

0.982
  crp Vibrio cholerae strain A1552

47.317

92.76

0.439
  crp Haemophilus influenzae Rd KW20

48.705

87.33

0.425

Multiple sequence alignment