Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FZO34_RS00120 Genome accession   NZ_CP043417
Coordinates   27041..27706 (-) Length   221 a.a.
NCBI ID   WP_000203219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain N13-03449     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 22041..32706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZO34_RS00100 (FZO34_00100) - 23652..24251 (+) 600 WP_000587877.1 glutathione S-transferase family protein -
  FZO34_RS00105 (FZO34_00105) - 24309..25001 (-) 693 WP_000698062.1 TIGR04219 family outer membrane beta-barrel protein -
  FZO34_RS00110 (FZO34_00110) - 25633..25875 (+) 243 Protein_16 sodium-dependent transporter -
  FZO34_RS00120 (FZO34_00120) crp 27041..27706 (-) 666 WP_000203219.1 cAMP-activated global transcriptional regulator CRP Regulator
  FZO34_RS19145 - 27947..28066 (+) 120 Protein_19 hypothetical protein -
  FZO34_RS00125 (FZO34_00125) - 28145..28567 (+) 423 WP_001195082.1 OsmC family protein -
  FZO34_RS00130 (FZO34_00130) - 28707..29797 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  FZO34_RS00135 (FZO34_00135) - 29816..31060 (+) 1245 Protein_22 sodium-dependent transporter -
  FZO34_RS00140 (FZO34_00140) - 31073..31216 (+) 144 WP_001097630.1 methionine/alanine import family NSS transporter small subunit -
  FZO34_RS00145 (FZO34_00145) rsmB 31259..32563 (-) 1305 WP_000084716.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24956.78 Da        Isoelectric Point: 8.1128

>NTDB_id=337061 FZO34_RS00120 WP_000203219.1 27041..27706(-) (crp) [Acinetobacter baumannii strain N13-03449]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=337061 FZO34_RS00120 WP_000203219.1 27041..27706(-) (crp) [Acinetobacter baumannii strain N13-03449]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

98.19

0.982
  crp Vibrio cholerae strain A1552

47.317

92.76

0.439
  crp Haemophilus influenzae Rd KW20

48.705

87.33

0.425

Multiple sequence alignment