Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FZN31_RS16330 Genome accession   NZ_CP043414
Coordinates   3420556..3422577 (-) Length   673 a.a.
NCBI ID   WP_000042541.1    Uniprot ID   B7LJY3
Organism   Escherichia coli strain EC42405     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3415556..3427577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN31_RS16320 (FZN31_16650) - 3415964..3418261 (-) 2298 WP_105287834.1 pentapeptide repeat-containing protein -
  FZN31_RS16325 (FZN31_16655) - 3418745..3420397 (+) 1653 WP_000553521.1 hypothetical protein -
  FZN31_RS16330 (FZN31_16660) uvrB 3420556..3422577 (-) 2022 WP_000042541.1 excinuclease ABC subunit UvrB Machinery gene
  FZN31_RS16335 (FZN31_16665) bioD 3423156..3423833 (-) 678 WP_000044826.1 dethiobiotin synthase -
  FZN31_RS16340 (FZN31_16670) bioC 3423826..3424581 (-) 756 WP_000246779.1 malonyl-ACP O-methyltransferase BioC -
  FZN31_RS16345 (FZN31_16675) bioF 3424568..3425722 (-) 1155 WP_032302731.1 8-amino-7-oxononanoate synthase -
  FZN31_RS16350 (FZN31_16680) bioB 3425719..3426759 (-) 1041 WP_000951213.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 76256.08 Da        Isoelectric Point: 4.8843

>NTDB_id=337031 FZN31_RS16330 WP_000042541.1 3420556..3422577(-) (uvrB) [Escherichia coli strain EC42405]
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF
FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLH
LTVGMIIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR
FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE
PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE
LEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS
MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE
GLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=337031 FZN31_RS16330 WP_000042541.1 3420556..3422577(-) (uvrB) [Escherichia coli strain EC42405]
ATGAGTAAACCGTTCAAACTGAATTCCGCTTTTAAACCTTCTGGCGATCAGCCAGAGGCGATTCGACGTCTCGAAGAGGG
GCTGGAAGATGGCCTGGCGCACCAGACGTTACTCGGTGTAACTGGCTCCGGGAAAACCTTCACCATCGCCAATGTCATTG
CTGACCTTCAGCGCCCAACCATGGTACTGGCGCCCAACAAAACGCTGGCGGCTCAACTGTACGGCGAAATGAAAGAGTTC
TTCCCGGAAAACGCGGTGGAATATTTCGTCTCATACTACGACTACTATCAGCCGGAAGCCTATGTTCCGAGTTCCGACAC
CTTCATTGAGAAAGATGCCTCGGTAAACGAACATATCGAGCAGATGCGTTTGTCCGCCACCAAAGCGATGCTGGAGCGGC
GTGATGTGGTTGTGGTGGCGTCTGTTTCCGCGATTTATGGTCTGGGCGATCCTGATTTATATCTCAAGATGATGCTCCAT
CTTACGGTCGGTATGATTATCGATCAGCGCGCGATCCTGCGTCGACTGGCGGAGCTGCAATACACCCGGAATGATCAAGC
CTTCCAGCGTGGCACTTTCCGCGTTCGTGGCGAGGTGATTGATATCTTCCCGGCAGAATCGGATGACATTGCACTTCGCG
TGGAGCTGTTTGATGAGGAAGTTGAACGATTGTCGTTATTTGACCCGCTAACCGGGCAGATTGTTTCTACTATTCCACGT
TTTACCATCTACCCGAAAACGCACTACGTCACGCCGCGCGAGCGCATTGTGCAGGCGATGGAAGAAATTAAAGAAGAACT
GGCCGCCAGACGCAAGGTGCTGTTAGAGAACAACAAACTTCTGGAAGAGCAGCGGCTGACTCAGCGTACCCAGTTTGACC
TGGAGATGATGAACGAACTGGGATATTGCTCGGGCATTGAAAACTACTCACGCTTCCTCTCCGGCCGTGGACCAGGTGAG
CCACCGCCGACGCTGTTTGATTACCTGCCTGCCGATGGGTTGCTGGTCGTCGATGAATCTCACGTCACCATTCCACAAAT
TGGCGGTATGTATCGCGGTGACCGGGCGCGTAAAGAGACGCTGGTGGAGTACGGTTTCCGCCTACCATCAGCGCTGGATA
ACCGTCCGCTGAAGTTTGAAGAGTTCGAAGCATTAGCGCCACAAACCATCTATGTTTCGGCGACGCCGGGTAATTACGAG
CTGGAAAAATCCGGTGGTGATGTGGTGGATCAGGTCGTACGTCCAACCGGATTGCTTGATCCGATTATCGAAGTGCGACC
GGTGGCAACACAGGTTGATGATCTTCTTTCGGAGATTCGCCAGCGAGCGGCAATTAACGAACGCGTGCTGGTCACAACAT
TGACTAAGCGGATGGCGGAAGATCTTACGGAATATCTCGAAGAACACGGCGAGCGTGTGCGTTATCTTCACTCAGATATC
GATACCGTCGAGCGCATGGAAATCATCCGCGACTTGCGTCTGGGTGAGTTCGACGTGCTGGTAGGGATCAACTTACTGCG
CGAAGGTCTGGATATGCCGGAAGTTTCGCTGGTGGCGATCCTCGACGCCGACAAAGAAGGCTTCCTGCGTTCCGAACGTT
CGTTGATCCAGACCATTGGTCGTGCGGCACGTAACGTTAACGGTAAAGCGATTCTCTACGGCGATAAGATCACCCCATCA
ATGGCGAAAGCGATTGGCGAAACCGAACGTCGCCGCGAGAAACAGCAGAAGTACAACGAGGAACACGGCATTACGCCGCA
AGGCTTGAACAAGAAAGTGGTCGATATCCTGGCGCTGGGGCAGAACATTGCTAAAACCAAAGCGAAGGGCAGAGGAAAAT
CGCGACCGATTGTTGAGCCGGATAATGTGCCGATGGATATGTCGCCTAAAGCGTTGCAGCAGAAAATCCATGAACTGGAA
GGGCTAATGATGCAACACGCGCAGAATCTGGAGTTCGAAGAAGCGGCGCAAATTCGTGACCAGTTGCATCAGCTGCGTGA
ATTGTTCATTGCGGCTTCGTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(634-667)

Ultra-violet resistance protein B (UvrB)

(552-593)

UvrB interaction domain (UvrB_inter)

(159-249)

Type III restriction enzyme, res subunit (ResIII)

(13-92)

Helicase conserved C-terminal domain (Helicase_C)

(436-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LJY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.372

99.108

0.559
  uvrB Streptococcus pneumoniae R6

56.222

99.108

0.557
  uvrB Streptococcus pneumoniae D39

56.222

99.108

0.557

Multiple sequence alignment