Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   BBR47_RS15645 Genome accession   NC_012491
Coordinates   3279467..3280180 (+) Length   237 a.a.
NCBI ID   WP_015891389.1    Uniprot ID   C0ZE64
Organism   Brevibacillus brevis NBRC 100599     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3274467..3285180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBR47_RS15625 (BBR47_30910) - 3276104..3276646 (+) 543 WP_015891385.1 hypothetical protein -
  BBR47_RS15630 (BBR47_30930) - 3276910..3277641 (-) 732 WP_015891386.1 ABC transporter permease -
  BBR47_RS15635 (BBR47_30940) - 3277654..3278403 (-) 750 WP_015891387.1 ABC transporter permease -
  BBR47_RS15640 (BBR47_30950) - 3278403..3279314 (-) 912 WP_015891388.1 ABC transporter ATP-binding protein -
  BBR47_RS15645 (BBR47_30960) scnR 3279467..3280180 (+) 714 WP_015891389.1 response regulator transcription factor Regulator
  BBR47_RS15650 (BBR47_30970) - 3280181..3281563 (+) 1383 WP_015891390.1 sensor histidine kinase -
  BBR47_RS15655 (BBR47_30980) - 3281654..3282685 (-) 1032 WP_015891391.1 ABC transporter substrate-binding protein -
  BBR47_RS15660 (BBR47_30990) - 3282682..3283440 (-) 759 WP_015891392.1 ABC transporter permease -
  BBR47_RS15665 (BBR47_31000) - 3283440..3284222 (-) 783 WP_041749456.1 ABC transporter ATP-binding protein -
  BBR47_RS15670 (BBR47_31010) tenA 3284207..3284887 (-) 681 WP_015891394.1 thiaminase II -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27158.53 Da        Isoelectric Point: 5.2325

>NTDB_id=33696 BBR47_RS15645 WP_015891389.1 3279467..3280180(+) (scnR) [Brevibacillus brevis NBRC 100599]
MEEWKQKKVLIVEDELEIRNMIDGFLRKEGFSRIFHAGSCKEALEICASDKPDIAILDVMLPDGDGFGLLTSIRRFSQIP
VIFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLLVILRRVYAPPQIDRLPVFQLGDSTIDLEAAIVTRDHHEYAL
TAKEHALLRKLYENRGRIVTSDALCQSVWGDDYYGYENTLMVHMRRIREKIEPCPSTPEFLLTVRGLGYKLLVKEEL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=33696 BBR47_RS15645 WP_015891389.1 3279467..3280180(+) (scnR) [Brevibacillus brevis NBRC 100599]
ATGGAAGAGTGGAAACAGAAAAAAGTGCTCATCGTGGAAGATGAGCTGGAAATCAGAAACATGATCGATGGATTTTTACG
TAAGGAAGGATTCTCTCGAATTTTTCATGCGGGTAGTTGTAAGGAGGCGTTAGAGATATGCGCTTCGGACAAGCCAGATA
TCGCGATCCTGGATGTCATGCTGCCTGATGGCGATGGATTTGGACTATTGACTTCGATCCGTCGTTTCTCGCAAATCCCT
GTCATTTTTCTGTCAGCGAGAGGGGAAGATGAAGATCGATTGCTCGGACTTGGCCTGGGCGCTGACGACTATATTGTGAA
ACCATTTTTACCGCGCGAGCTCGTTCTTCGTCTCCTGGTCATTTTACGACGTGTTTACGCCCCTCCCCAAATCGATCGTC
TGCCCGTTTTCCAGCTTGGTGACAGTACGATCGATTTGGAGGCAGCAATCGTGACGAGAGATCACCACGAATATGCTCTG
ACTGCAAAGGAACACGCGCTCTTGCGAAAACTCTATGAAAATCGAGGACGAATCGTCACGAGCGATGCCCTGTGCCAATC
CGTATGGGGGGACGATTACTACGGGTATGAAAACACCCTGATGGTTCATATGAGGCGCATTCGCGAAAAGATCGAGCCAT
GCCCATCCACTCCTGAATTTTTGCTCACGGTAAGAGGACTCGGATACAAATTACTCGTAAAGGAAGAGTTGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0ZE64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.304

97.046

0.498
  micA Streptococcus pneumoniae Cp1015

42.174

97.046

0.409
  vicR Streptococcus mutans UA159

41.048

96.624

0.397

Multiple sequence alignment