Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BBR47_RS12005 Genome accession   NC_012491
Coordinates   2429358..2431082 (+) Length   574 a.a.
NCBI ID   WP_012686041.1    Uniprot ID   C0ZC14
Organism   Brevibacillus brevis NBRC 100599     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2424358..2436082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBR47_RS11985 (BBR47_23420) dxs 2425199..2427085 (+) 1887 WP_012686037.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BBR47_RS11990 (BBR47_23430) - 2427082..2427900 (+) 819 WP_012686038.1 TlyA family RNA methyltransferase -
  BBR47_RS11995 (BBR47_23440) - 2428029..2428886 (+) 858 WP_012686039.1 NAD(+)/NADH kinase -
  BBR47_RS12000 (BBR47_23450) ahrC 2428892..2429341 (+) 450 WP_012686040.1 transcriptional regulator AhrC/ArgR -
  BBR47_RS12005 (BBR47_23460) recN 2429358..2431082 (+) 1725 WP_012686041.1 DNA repair protein RecN Machinery gene
  BBR47_RS12010 (BBR47_23470) spoIVB 2431324..2432658 (+) 1335 WP_012686042.1 SpoIVB peptidase -
  BBR47_RS12015 (BBR47_23490) spo0A 2432919..2433707 (+) 789 WP_012686044.1 sporulation transcription factor Spo0A -
  BBR47_RS12020 (BBR47_23500) - 2433912..2434106 (+) 195 WP_012686045.1 hypothetical protein -
  BBR47_RS12025 (BBR47_23510) - 2434130..2434816 (+) 687 WP_012686046.1 hypothetical protein -
  BBR47_RS12030 (BBR47_23520) - 2434914..2435351 (-) 438 WP_012686047.1 hypothetical protein -
  BBR47_RS12035 (BBR47_23530) - 2435468..2435917 (+) 450 WP_231850586.1 hypothetical protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64730.62 Da        Isoelectric Point: 4.7198

>NTDB_id=33689 BBR47_RS12005 WP_012686041.1 2429358..2431082(+) (recN) [Brevibacillus brevis NBRC 100599]
MLVELSIRNFAIIKSVTISFQKGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGEPRAEVEGLFELPPGHPGLDVC
KNVGVQIEQDGMLVVRRDISNQGKSIIRINGQLVTLAMLRELGPWLVTVHGQHDTHMLMQSDKHINWLDAYGESALGAAK
QEYSTLYTAYRKTKQDLERMARNDRELVQRIDLLQYQLDEIESATLTPGEDEKLMQQRKKWMNIEKVYSTIQDAYRALHG
DQKGMDWLGHAMGELERGVNYEEQLVPILEIVQSAYYQIEDVVHNLRQLSYQMDFEPEQLAEVERRLDQIQSLKRKYGKS
VDDILEYAATIQDELDDMHHYEDRLQQVEKQLQEFAADLAVEALELSVIRSECAGKLAQEIEQQLKELHMERARFAIDVR
QTPDDDGVEIDGIKRFVDANGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVSG
RAAQAIAEKLARVAGQRQVLCITHLPQVASMADAHFLIKKEMSENETETRVNRLSDDERVSELARMLSGAEVTAKTEEHA
REMILLGRERKTVS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=33689 BBR47_RS12005 WP_012686041.1 2429358..2431082(+) (recN) [Brevibacillus brevis NBRC 100599]
ATGCTAGTGGAACTCTCGATCCGAAATTTTGCCATCATCAAATCAGTGACGATCTCATTCCAAAAAGGCTTAAACATCCT
GACAGGGGAGACTGGTGCCGGTAAATCCATCATTATCGATGCGCTAGGACTGTTGTTAGGAGGCCGGGCTTCGGCTGATT
TTGTCCGATATGGTGAGCCTCGTGCAGAAGTGGAAGGACTGTTTGAATTGCCGCCTGGTCACCCTGGACTTGACGTTTGT
AAGAATGTCGGCGTCCAGATTGAGCAAGACGGAATGCTCGTGGTACGTCGAGATATCTCGAACCAAGGGAAGAGTATCAT
TCGAATCAATGGACAGCTCGTGACTCTCGCAATGCTGCGTGAGTTAGGGCCATGGCTGGTTACGGTACATGGACAACACG
ATACGCATATGCTGATGCAGTCAGACAAGCATATCAATTGGCTTGACGCGTATGGGGAAAGTGCGTTGGGAGCTGCGAAA
CAAGAGTACAGTACCCTGTATACGGCGTACCGCAAAACAAAGCAAGATCTGGAGCGAATGGCACGCAATGATCGGGAGCT
GGTACAGCGTATCGATCTGTTGCAATATCAGCTCGATGAAATTGAATCGGCAACCCTTACGCCTGGTGAAGACGAGAAGC
TCATGCAGCAGCGGAAAAAGTGGATGAACATTGAAAAAGTTTATTCAACGATTCAAGATGCATACCGTGCATTGCATGGT
GACCAGAAGGGCATGGATTGGTTGGGACATGCGATGGGAGAGCTTGAGCGTGGTGTGAACTACGAAGAACAGCTCGTTCC
GATTTTGGAGATAGTCCAATCGGCATACTATCAGATAGAAGATGTGGTGCATAACCTTCGTCAATTATCGTACCAAATGG
ATTTTGAACCGGAGCAGCTGGCAGAAGTAGAGCGCCGCCTTGATCAAATCCAGTCGCTAAAACGCAAGTATGGCAAAAGC
GTAGACGATATTTTGGAGTACGCGGCCACGATTCAGGATGAATTGGATGACATGCATCACTACGAAGATCGCCTCCAGCA
GGTGGAAAAGCAATTGCAGGAGTTCGCAGCCGATTTGGCAGTGGAGGCATTGGAGTTGTCGGTTATTCGTTCCGAATGTG
CAGGAAAGCTCGCACAAGAAATCGAGCAGCAGCTAAAAGAACTGCACATGGAGCGTGCTCGTTTTGCCATCGACGTCAGA
CAGACACCGGATGATGACGGGGTAGAAATCGACGGAATCAAGCGCTTTGTAGATGCGAATGGAATGGATCAGATCGAGTT
TTTAATTTCACCTAACCCGGGAGAACCATTGCGTCCCTTGGCGAAGATTGCTTCTGGTGGGGAGTTGTCTCGCGTCATGC
TGGCCATTAAAACGATTTTGGCGGGCACGGATCAAGTGGAGACCCTTATTTTTGATGAAGTCGACACGGGTGTAAGCGGA
AGAGCAGCTCAAGCGATAGCAGAAAAGCTTGCTCGAGTCGCTGGGCAGCGCCAAGTCCTTTGTATTACTCACTTGCCACA
GGTCGCATCCATGGCAGACGCTCATTTTCTGATTAAAAAGGAAATGAGCGAGAATGAAACAGAGACGCGGGTGAATCGTT
TGTCTGATGATGAACGGGTATCAGAGCTGGCTCGGATGCTAAGCGGGGCAGAGGTCACAGCAAAAACTGAAGAACATGCG
CGCGAGATGATCCTTCTCGGCCGCGAACGAAAGACTGTCAGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0ZC14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.264

100

0.484

Multiple sequence alignment