Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FY406_RS07715 Genome accession   NZ_CP043405
Coordinates   1530676..1532667 (+) Length   663 a.a.
NCBI ID   WP_003087840.1    Uniprot ID   A0ABP2QXB5
Organism   Streptococcus ratti strain ATCC 31377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1525676..1537667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS07705 (FY406_07705) - 1527585..1528325 (-) 741 WP_003087836.1 amino acid ABC transporter ATP-binding protein -
  FY406_RS07710 (FY406_07710) - 1528325..1530517 (-) 2193 WP_003087838.1 ABC transporter substrate-binding protein/permease -
  FY406_RS07715 (FY406_07715) uvrB 1530676..1532667 (+) 1992 WP_003087840.1 excinuclease ABC subunit UvrB Machinery gene
  FY406_RS10585 - 1532700..1532831 (+) 132 WP_263641519.1 hypothetical protein -
  FY406_RS07720 (FY406_07720) - 1532841..1533089 (+) 249 Protein_1467 hypothetical protein -
  FY406_RS07725 (FY406_07725) - 1533109..1533222 (+) 114 WP_126417969.1 hypothetical protein -
  FY406_RS07730 (FY406_07730) - 1533413..1534303 (+) 891 WP_126417922.1 helix-turn-helix transcriptional regulator -
  FY406_RS07735 (FY406_07735) - 1534354..1534818 (+) 465 WP_003087850.1 8-oxo-dGTP diphosphatase -
  FY406_RS07740 (FY406_07740) - 1534959..1535774 (+) 816 WP_003087855.1 transporter substrate-binding domain-containing protein -
  FY406_RS07745 (FY406_07745) - 1536189..1537001 (+) 813 WP_003087862.1 transporter substrate-binding domain-containing protein -
  FY406_RS07750 (FY406_07750) rpsU 1537149..1537325 (+) 177 WP_000048058.1 30S ribosomal protein S21 -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76005.00 Da        Isoelectric Point: 4.5994

>NTDB_id=336870 FY406_RS07715 WP_003087840.1 1530676..1532667(+) (uvrB) [Streptococcus ratti strain ATCC 31377]
MIDKVENNRFKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILMGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYA
DSVVSLRPGQEISRDRLLNDLVAIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRIEFFGDEIDRIREIESLTGRVL
GEVDHLAIFPATHFMTNDEHMEIAIARIQEELKEQLRLFESEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDG
RTEGEPPYTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYELAQTDTVIEQIIRPTGLLDPEVEVRPTMGQMDDLLGEITRRAEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADT
MTQSMQNAIDETHRRRQIQMAYNEEHGIIPQTIKKDIRDLIAISKSTGSDVTEETIDYNAMTKSERQETIKKLQKQMQEA
AELLDFELAAEIRDMVLELKAMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=336870 FY406_RS07715 WP_003087840.1 1530676..1532667(+) (uvrB) [Streptococcus ratti strain ATCC 31377]
ATGATTGATAAAGTTGAAAACAATAGATTTAAATTAGTTTCTAAATACCAACCATCAGGAGATCAGCCAGAGGCTATTGA
AGCTTTGGTGGATAATATCGAAGGCGGTGAGAAAGCACAGATCCTGATGGGAGCAACCGGTACAGGCAAGACCTATACCA
TGAGCCAGGTTATTCAAAGGGTCAACAAACCGACCTTGGTCATCGCCCATAATAAGACGCTTGCTGGTCAGCTTTACGGG
GAATTTAAGGAATTTTTCCCTGATAATGCCGTTGAGTACTTTGTATCTTACTACGACTATTACCAGCCAGAAGCTTATGT
GCCGTCCAGTGATACCTATATTGAAAAAGATAGTTCAGTCAATGATGAGATTGACAAACTCCGCCACTCAGCAACATCAT
CCTTGCTTGAGCGCAATGATGTCATTGTTGTCGCATCTGTTTCTTGCATTTACGGTTTAGGTTCGCCTAAGGAATACGCT
GACAGTGTTGTCAGCCTGCGGCCCGGGCAGGAGATTTCTCGTGACCGGCTCTTAAATGACTTGGTGGCTATTCAGTTTGA
GCGTAATGATATTGATTTTCAGCGCGGTCGCTTTCGTGTGCGCGGTGATGTGGTGGAGATTTTTCCAGCCAGCCGTGATG
AACACGCCTTTCGTATCGAATTTTTCGGCGATGAAATTGATCGCATTCGTGAAATTGAAAGTCTAACCGGCCGTGTTCTC
GGTGAGGTTGACCACCTAGCTATCTTCCCGGCCACTCATTTCATGACCAATGACGAGCACATGGAGATTGCTATTGCAAG
AATCCAAGAGGAGCTCAAAGAGCAGCTCAGACTCTTTGAATCAGAGGGCAAGCTCTTAGAAGCGCAGCGATTAAAACAAA
GAACCGACTACGACATCGAAATGCTGCGGGAAATGGGCTATACCAATGGTGTTGAAAACTATTCCCGCCATATGGACGGC
AGAACTGAAGGTGAGCCGCCTTATACGCTTTTAGACTTTTTCCCTGAAGATTTTCTGATCATGGTCGATGAAAGTCACAT
GACCATGGGACAGATTAAGGGAATGTATAATGGCGACCGCTCGCGTAAAGAGATGCTGGTCAATTACGGCTTTCGTCTTC
CGAGTGCCTTGGACAACCGTCCCTTGCGCCGGGAAGAATTTGAAAGTCATGTTCATCAGATTGTCTATGTCTCAGCAACG
CCGGGAGATTACGAACTTGCGCAGACAGACACGGTCATTGAGCAAATTATTCGTCCGACTGGTCTCTTGGATCCGGAAGT
AGAAGTACGGCCGACCATGGGGCAGATGGATGATTTGTTGGGCGAAATTACTAGGCGTGCCGAAAAGGGTGAGCGGGTCT
TTGTCACAACTCTGACTAAGAAGATGGCAGAAGACCTGACGGACTATCTCAAGGAAATGGGGGTCAAGGTCAAATATATG
CACTCAGACATCAAGACCTTGGAACGTACTGAGATTATCCGTGACCTGCGTCTGGGCGTTTTTGATGTGCTTGTAGGGAT
TAATTTGCTGCGCGAAGGAATTGACGTCCCAGAGGTCAGCTTAGTAGCTATCCTTGATGCGGACAAGGAAGGCTTCCTGC
GCAATGAACGCGGTCTTATCCAGACCATTGGCCGGGCTGCCCGTAACAGCGAGGGTCATGTTATCATGTATGCTGACACC
ATGACTCAGTCCATGCAAAATGCTATTGATGAGACCCACCGCCGCCGTCAAATTCAAATGGCCTACAACGAAGAACACGG
CATTATTCCGCAAACCATCAAGAAAGATATCCGCGACCTTATCGCCATCAGCAAATCAACGGGCAGCGATGTAACAGAAG
AAACCATTGATTACAATGCTATGACCAAATCTGAACGCCAAGAAACTATCAAAAAGCTGCAAAAACAAATGCAGGAAGCC
GCCGAGCTGCTTGACTTTGAGCTGGCTGCCGAGATCCGCGATATGGTGCTGGAGCTCAAGGCTATGGATTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(628-661)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB interaction domain (UvrB_inter)

(164-254)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

88.386

100

0.884
  uvrB Streptococcus pneumoniae D39

88.386

100

0.884
  uvrB Streptococcus pneumoniae TIGR4

88.235

100

0.882

Multiple sequence alignment