Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   FY406_RS04730 Genome accession   NZ_CP043405
Coordinates   970040..972055 (+) Length   671 a.a.
NCBI ID   WP_003086600.1    Uniprot ID   A0ABN0GX19
Organism   Streptococcus ratti strain ATCC 31377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 965040..977055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS04710 (FY406_04710) - 966163..967194 (+) 1032 WP_003086606.1 3-deoxy-7-phosphoheptulonate synthase -
  FY406_RS04715 (FY406_04715) - 967196..968230 (+) 1035 WP_003086604.1 3-deoxy-7-phosphoheptulonate synthase -
  FY406_RS04720 (FY406_04720) acpS 968375..968731 (+) 357 WP_003086603.1 holo-ACP synthase -
  FY406_RS04725 (FY406_04725) alr 968728..969855 (+) 1128 WP_003086601.1 alanine racemase -
  FY406_RS04730 (FY406_04730) recG/mmsA 970040..972055 (+) 2016 WP_003086600.1 ATP-dependent DNA helicase RecG Machinery gene
  FY406_RS04735 (FY406_04735) - 972142..972294 (-) 153 WP_003086598.1 hypothetical protein -
  FY406_RS04740 (FY406_04740) - 972308..973267 (-) 960 WP_003086594.1 asparaginase -
  FY406_RS04745 (FY406_04745) - 973340..974722 (+) 1383 WP_003086590.1 Cof-type HAD-IIB family hydrolase -
  FY406_RS04750 (FY406_04750) - 974948..975397 (-) 450 WP_003086587.1 universal stress protein -
  FY406_RS04755 (FY406_04755) - 975495..976031 (-) 537 WP_003086585.1 biotin transporter BioY -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75248.77 Da        Isoelectric Point: 6.9501

>NTDB_id=336849 FY406_RS04730 WP_003086600.1 970040..972055(+) (recG/mmsA) [Streptococcus ratti strain ATCC 31377]
MDLQASIAVLKGLGPKSAEKFHKLDIYTIEDLLLYYPFRYEDFKTKSVFDLVDGEKAVVTGTVVTPPNVQYYGFKRNRLS
FKIKQGEAVIAVSFFNQPYLQDKVEIDQEIAIFGKWNQAKSSLTGIKILVQAADDMQPVYHVAQGISQAALVKAIKSAFD
SGYADSLPENLPQVLLDKYRLLDRKTATRAMHFPKDLAEYRQALRRIKFEELFYFQLNLQILKADNKTESNGLVIAYDRT
KIASKIAELPFPLTGAQKRSLEEILADMASGAHMNRLLQGDVGSGKTVVAGLAMYAAYTAGMQSALMVPTEILAEQHYDS
LNTLFPELSIALLTSGMKAAVKRSALAAITNGSVDMIVGTHALIQEGVDYHKLGLVITDEQHRFGVKQRRLFREKGENPD
VLMMTATPIPRTLAITAFGDMDVSVIDEMPKGRKPIKTRWVKHEQLDKVLSWVKDQIEKGAQIYVVSPLIEESKSLDLKN
AHALEKELKDYFADTANIALMHGRMKNDEKDAIMQEFKKGTVDILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGDKQSYAILVANPKTDTGKDRMRIMTETTDGFLLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR
LAAEIVYNKDWQQDKRWAVLVQNLKQKEILD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=336849 FY406_RS04730 WP_003086600.1 970040..972055(+) (recG/mmsA) [Streptococcus ratti strain ATCC 31377]
ATGGACTTACAAGCGTCAATTGCAGTTTTAAAGGGTTTGGGTCCTAAGTCTGCAGAAAAATTTCACAAATTAGATATTTA
TACAATCGAAGATCTGCTGCTCTATTATCCTTTCCGCTATGAAGATTTTAAAACCAAGTCTGTTTTTGACTTGGTGGATG
GTGAAAAGGCAGTTGTCACTGGAACTGTCGTAACTCCACCAAATGTTCAGTATTATGGTTTTAAACGCAACCGCTTATCC
TTTAAAATTAAGCAGGGGGAAGCTGTCATTGCTGTGTCTTTTTTCAATCAGCCCTATTTGCAGGATAAGGTGGAAATTGA
TCAGGAAATTGCTATTTTTGGCAAATGGAATCAGGCCAAATCTTCTTTGACAGGCATTAAAATTTTAGTTCAGGCAGCTG
ATGACATGCAGCCCGTTTACCATGTTGCCCAAGGCATCTCGCAGGCTGCTCTGGTTAAGGCGATTAAATCGGCCTTTGAC
TCAGGCTATGCAGACAGCTTGCCTGAAAATCTTCCTCAGGTTTTGCTGGATAAGTATCGGTTATTGGATAGAAAGACTGC
GACTAGGGCCATGCATTTTCCCAAAGATTTGGCAGAATACCGTCAGGCTCTTCGGCGCATTAAATTTGAAGAACTGTTCT
ATTTTCAGCTGAATCTGCAGATTTTAAAAGCAGATAATAAGACAGAGTCAAATGGTTTAGTGATAGCCTATGACAGAACA
AAAATAGCAAGCAAAATTGCGGAACTGCCTTTTCCTTTGACAGGTGCACAAAAACGCAGCTTAGAAGAGATACTGGCAGA
TATGGCATCTGGAGCCCATATGAACCGTCTTTTACAAGGGGATGTCGGCTCCGGCAAGACTGTTGTCGCCGGTCTTGCTA
TGTATGCAGCCTATACAGCTGGTATGCAGTCTGCTTTGATGGTGCCAACGGAAATTTTGGCAGAACAGCACTATGACAGT
CTGAATACCCTGTTTCCTGAATTGTCTATTGCCCTGCTGACCTCGGGCATGAAGGCTGCTGTCAAACGCTCAGCCCTGGC
TGCTATTACCAATGGCTCTGTTGATATGATTGTGGGGACGCATGCTTTAATTCAAGAAGGAGTTGACTACCATAAACTGG
GTTTGGTCATTACCGATGAACAGCACCGATTTGGAGTTAAGCAAAGGCGCCTTTTCCGGGAAAAAGGAGAGAATCCTGAT
GTCCTCATGATGACTGCCACTCCCATTCCCAGAACGCTGGCTATCACGGCTTTTGGAGATATGGATGTCTCTGTTATTGA
TGAAATGCCAAAGGGGCGCAAGCCCATTAAGACACGCTGGGTCAAGCATGAACAGCTGGATAAGGTTCTGTCTTGGGTCA
AGGATCAGATTGAAAAAGGGGCGCAGATTTATGTCGTTTCTCCCCTGATTGAAGAGTCTAAAAGTCTTGATTTAAAAAAC
GCCCATGCCTTAGAAAAAGAATTAAAAGATTATTTTGCTGATACGGCCAACATTGCTCTCATGCACGGCCGCATGAAAAA
TGACGAAAAAGATGCTATCATGCAGGAATTTAAAAAAGGAACTGTGGATATTTTGGTATCAACAACAGTCATCGAAGTCG
GTGTCAATGTTCCCAATGCTACCATCATGATCATTATGGATGCAGACCGCTTTGGCCTCAGTCAGCTGCATCAGCTGCGC
GGGCGTGTCGGCCGCGGTGATAAGCAGTCCTATGCTATTTTAGTAGCTAATCCTAAAACAGATACTGGAAAAGATCGCAT
GCGGATTATGACTGAAACGACAGATGGTTTTCTTTTGGCAGAAGAAGATTTGAAAATGCGCGGTTCCGGTGAAATTTTCG
GAACGCGCCAATCGGGAATTCCTGAGTTTCAGGTGGCTGACATCGTGGAGGACTACAATATTTTGGAAGAAGCCCGCCGC
CTTGCAGCAGAAATTGTCTATAATAAAGACTGGCAGCAAGATAAACGCTGGGCAGTGCTCGTTCAAAACCTTAAACAAAA
GGAGATTTTAGATTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)

DEAD/DEAH box helicase (DEAD)

(256-409)

Helicase conserved C-terminal domain (Helicase_C)

(453-566)

RecG wedge domain (RecG_wedge)

(7-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

70.045

100

0.7
  recG/mmsA Streptococcus pneumoniae R36A

70.045

100

0.7
  recG Bacillus subtilis subsp. subtilis str. 168

49.926

100

0.501
  recG Neisseria meningitidis strain C311

40.276

97.317

0.392

Multiple sequence alignment