Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   EQZ01_RS18650 Genome accession   NZ_CP035231
Coordinates   3554289..3554978 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM103571     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3549289..3559978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS18615 (EQZ01_18615) flgN 3549469..3549951 (-) 483 WP_003227999.1 flagellar protein FlgN -
  EQZ01_RS18620 (EQZ01_18620) flgM 3549967..3550233 (-) 267 WP_128738293.1 flagellar biosynthesis anti-sigma factor FlgM -
  EQZ01_RS18625 (EQZ01_18625) yvyF 3550314..3550733 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  EQZ01_RS18630 (EQZ01_18630) comFC 3550807..3551529 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  EQZ01_RS18635 (EQZ01_18635) comFB 3551493..3551789 (-) 297 WP_003227989.1 late competence protein ComFB -
  EQZ01_RS18640 (EQZ01_18640) comFA 3551849..3553240 (-) 1392 WP_128738294.1 ATP-dependent helicase ComFA Machinery gene
  EQZ01_RS18645 (EQZ01_18645) fakBA 3553346..3554191 (-) 846 WP_128738295.1 DegV family protein -
  EQZ01_RS18650 (EQZ01_18650) degU 3554289..3554978 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EQZ01_RS18655 (EQZ01_18655) degS 3555061..3556218 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  EQZ01_RS18660 (EQZ01_18660) yvyE 3556435..3557088 (+) 654 WP_003227979.1 YigZ family protein -
  EQZ01_RS18665 (EQZ01_18665) tagV 3557088..3558263 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  EQZ01_RS18670 (EQZ01_18670) tagO 3558336..3559412 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=336488 EQZ01_RS18650 WP_003219701.1 3554289..3554978(-) (degU) [Bacillus subtilis strain SRCM103571]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=336488 EQZ01_RS18650 WP_003219701.1 3554289..3554978(-) (degU) [Bacillus subtilis strain SRCM103571]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment