Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EQZ01_RS18640 Genome accession   NZ_CP035231
Coordinates   3551849..3553240 (-) Length   463 a.a.
NCBI ID   WP_128738294.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103571     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3546849..3558240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS18605 (EQZ01_18605) flgL 3547020..3547916 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  EQZ01_RS18610 (EQZ01_18610) flgK 3547927..3549450 (-) 1524 WP_128738292.1 flagellar hook-associated protein FlgK -
  EQZ01_RS18615 (EQZ01_18615) flgN 3549469..3549951 (-) 483 WP_003227999.1 flagellar protein FlgN -
  EQZ01_RS18620 (EQZ01_18620) flgM 3549967..3550233 (-) 267 WP_128738293.1 flagellar biosynthesis anti-sigma factor FlgM -
  EQZ01_RS18625 (EQZ01_18625) yvyF 3550314..3550733 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  EQZ01_RS18630 (EQZ01_18630) comFC 3550807..3551529 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  EQZ01_RS18635 (EQZ01_18635) comFB 3551493..3551789 (-) 297 WP_003227989.1 late competence protein ComFB -
  EQZ01_RS18640 (EQZ01_18640) comFA 3551849..3553240 (-) 1392 WP_128738294.1 ATP-dependent helicase ComFA Machinery gene
  EQZ01_RS18645 (EQZ01_18645) fakBA 3553346..3554191 (-) 846 WP_128738295.1 DegV family protein -
  EQZ01_RS18650 (EQZ01_18650) degU 3554289..3554978 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EQZ01_RS18655 (EQZ01_18655) degS 3555061..3556218 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  EQZ01_RS18660 (EQZ01_18660) yvyE 3556435..3557088 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52593.68 Da        Isoelectric Point: 10.0082

>NTDB_id=336487 EQZ01_RS18640 WP_128738294.1 3551849..3553240(-) (comFA) [Bacillus subtilis strain SRCM103571]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAVACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=336487 EQZ01_RS18640 WP_128738294.1 3551849..3553240(-) (comFA) [Bacillus subtilis strain SRCM103571]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGTTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACTGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.784

100

0.998

Multiple sequence alignment