Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EQZ01_RS18630 Genome accession   NZ_CP035231
Coordinates   3550807..3551529 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain SRCM103571     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3545807..3556529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS18595 (EQZ01_18595) fliW 3545946..3546377 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  EQZ01_RS18600 (EQZ01_18600) yviE 3546398..3546973 (-) 576 WP_128738291.1 DUF6470 family protein -
  EQZ01_RS18605 (EQZ01_18605) flgL 3547020..3547916 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  EQZ01_RS18610 (EQZ01_18610) flgK 3547927..3549450 (-) 1524 WP_128738292.1 flagellar hook-associated protein FlgK -
  EQZ01_RS18615 (EQZ01_18615) flgN 3549469..3549951 (-) 483 WP_003227999.1 flagellar protein FlgN -
  EQZ01_RS18620 (EQZ01_18620) flgM 3549967..3550233 (-) 267 WP_128738293.1 flagellar biosynthesis anti-sigma factor FlgM -
  EQZ01_RS18625 (EQZ01_18625) yvyF 3550314..3550733 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  EQZ01_RS18630 (EQZ01_18630) comFC 3550807..3551529 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  EQZ01_RS18635 (EQZ01_18635) comFB 3551493..3551789 (-) 297 WP_003227989.1 late competence protein ComFB -
  EQZ01_RS18640 (EQZ01_18640) comFA 3551849..3553240 (-) 1392 WP_128738294.1 ATP-dependent helicase ComFA Machinery gene
  EQZ01_RS18645 (EQZ01_18645) fakBA 3553346..3554191 (-) 846 WP_128738295.1 DegV family protein -
  EQZ01_RS18650 (EQZ01_18650) degU 3554289..3554978 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EQZ01_RS18655 (EQZ01_18655) degS 3555061..3556218 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=336486 EQZ01_RS18630 WP_003227991.1 3550807..3551529(-) (comFC) [Bacillus subtilis strain SRCM103571]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=336486 EQZ01_RS18630 WP_003227991.1 3550807..3551529(-) (comFC) [Bacillus subtilis strain SRCM103571]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment