Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EQY76_RS12570 Genome accession   NZ_CP035230
Coordinates   2369041..2369376 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SRCM103551     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2364041..2374376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQY76_RS12550 (EQY76_12550) gcvT 2364633..2365721 (-) 1089 WP_003230205.1 glycine cleavage system aminomethyltransferase GcvT -
  EQY76_RS12555 (EQY76_12555) hepAA 2366163..2367836 (+) 1674 WP_003230203.1 SNF2-related protein -
  EQY76_RS12560 (EQY76_12560) yqhG 2367857..2368651 (+) 795 WP_003230200.1 YqhG family protein -
  EQY76_RS12565 (EQY76_12565) sinI 2368834..2369007 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  EQY76_RS12570 (EQY76_12570) sinR 2369041..2369376 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  EQY76_RS12575 (EQY76_12575) tasA 2369469..2370254 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  EQY76_RS12580 (EQY76_12580) sipW 2370318..2370890 (-) 573 WP_003230181.1 signal peptidase I SipW -
  EQY76_RS12585 (EQY76_12585) tapA 2370874..2371635 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  EQY76_RS12590 (EQY76_12590) yqzG 2371907..2372233 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  EQY76_RS12595 (EQY76_12595) spoIITA 2372275..2372454 (-) 180 WP_029726723.1 YqzE family protein -
  EQY76_RS12600 (EQY76_12600) comGG 2372526..2372900 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  EQY76_RS12605 (EQY76_12605) comGF 2372901..2373284 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  EQY76_RS12610 (EQY76_12610) comGE 2373310..2373657 (-) 348 WP_046381178.1 ComG operon protein 5 Machinery gene
  EQY76_RS12615 (EQY76_12615) comGD 2373641..2374072 (-) 432 WP_046381179.1 comG operon protein ComGD Machinery gene
  EQY76_RS12620 (EQY76_12620) comGC 2374062..2374358 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=336379 EQY76_RS12570 WP_003226345.1 2369041..2369376(+) (sinR) [Bacillus subtilis strain SRCM103551]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=336379 EQY76_RS12570 WP_003226345.1 2369041..2369376(+) (sinR) [Bacillus subtilis strain SRCM103551]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment