Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   EQW70_RS08020 Genome accession   NZ_CP035226
Coordinates   1504399..1504863 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain SRCM103517     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499399..1509863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS08000 (EQW70_08000) kinA 1499866..1501686 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  EQW70_RS08005 (EQW70_08005) dapX 1501696..1502877 (-) 1182 WP_101502064.1 aminotransferase A -
  EQW70_RS08010 (EQW70_08010) - 1503079..1503240 (-) 162 WP_014476654.1 hypothetical protein -
  EQW70_RS08015 (EQW70_08015) cheV 1503444..1504355 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  EQW70_RS08020 (EQW70_08020) kre 1504399..1504863 (-) 465 WP_003232406.1 YkyB family protein Regulator
  EQW70_RS08025 (EQW70_08025) ykuC 1504989..1506281 (-) 1293 WP_014479656.1 MFS transporter -
  EQW70_RS08030 (EQW70_08030) ltdD 1506357..1506851 (-) 495 WP_010886500.1 L,D-transpeptidase family protein -
  EQW70_RS08035 (EQW70_08035) ppeE 1506908..1507768 (-) 861 WP_128740300.1 metallophosphoesterase -
  EQW70_RS08040 (EQW70_08040) fadH 1507911..1508675 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=336209 EQW70_RS08020 WP_003232406.1 1504399..1504863(-) (kre) [Bacillus subtilis strain SRCM103517]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=336209 EQW70_RS08020 WP_003232406.1 1504399..1504863(-) (kre) [Bacillus subtilis strain SRCM103517]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGAGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment