Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EQI27_RS12485 Genome accession   NZ_CP035163
Coordinates   2426442..2426777 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SRCM103923     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2421442..2431777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI27_RS12465 (EQI27_12465) gcvT 2422035..2423123 (-) 1089 WP_041850013.1 glycine cleavage system aminomethyltransferase GcvT -
  EQI27_RS12470 (EQI27_12470) hepAA 2423564..2425237 (+) 1674 WP_041850014.1 SNF2-related protein -
  EQI27_RS12475 (EQI27_12475) yqhG 2425258..2426052 (+) 795 WP_003230200.1 YqhG family protein -
  EQI27_RS12480 (EQI27_12480) sinI 2426235..2426408 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  EQI27_RS12485 (EQI27_12485) sinR 2426442..2426777 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  EQI27_RS12490 (EQI27_12490) tasA 2426870..2427655 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  EQI27_RS12495 (EQI27_12495) sipW 2427719..2428291 (-) 573 WP_128492866.1 signal peptidase I SipW -
  EQI27_RS12500 (EQI27_12500) tapA 2428275..2429036 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  EQI27_RS12505 (EQI27_12505) yqzG 2429308..2429634 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  EQI27_RS12510 (EQI27_12510) spoIITA 2429676..2429855 (-) 180 WP_003230176.1 YqzE family protein -
  EQI27_RS12515 (EQI27_12515) comGG 2429926..2430300 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  EQI27_RS12520 (EQI27_12520) comGF 2430301..2430684 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  EQI27_RS12525 (EQI27_12525) comGE 2430710..2431057 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  EQI27_RS12530 (EQI27_12530) comGD 2431041..2431472 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  EQI27_RS12535 (EQI27_12535) comGC 2431462..2431758 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=335120 EQI27_RS12485 WP_003226345.1 2426442..2426777(+) (sinR) [Bacillus subtilis strain SRCM103923]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=335120 EQI27_RS12485 WP_003226345.1 2426442..2426777(+) (sinR) [Bacillus subtilis strain SRCM103923]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment