Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   EQI27_RS12530 Genome accession   NZ_CP035163
Coordinates   2431041..2431472 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103923     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2426041..2436472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI27_RS12480 (EQI27_12480) sinI 2426235..2426408 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  EQI27_RS12485 (EQI27_12485) sinR 2426442..2426777 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  EQI27_RS12490 (EQI27_12490) tasA 2426870..2427655 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  EQI27_RS12495 (EQI27_12495) sipW 2427719..2428291 (-) 573 WP_128492866.1 signal peptidase I SipW -
  EQI27_RS12500 (EQI27_12500) tapA 2428275..2429036 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  EQI27_RS12505 (EQI27_12505) yqzG 2429308..2429634 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  EQI27_RS12510 (EQI27_12510) spoIITA 2429676..2429855 (-) 180 WP_003230176.1 YqzE family protein -
  EQI27_RS12515 (EQI27_12515) comGG 2429926..2430300 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  EQI27_RS12520 (EQI27_12520) comGF 2430301..2430684 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  EQI27_RS12525 (EQI27_12525) comGE 2430710..2431057 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  EQI27_RS12530 (EQI27_12530) comGD 2431041..2431472 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  EQI27_RS12535 (EQI27_12535) comGC 2431462..2431758 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  EQI27_RS12540 (EQI27_12540) comGB 2431772..2432809 (-) 1038 WP_041850016.1 comG operon protein ComGB Machinery gene
  EQI27_RS12545 (EQI27_12545) comGA 2432796..2433866 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  EQI27_RS12555 (EQI27_12555) corA 2434277..2435230 (-) 954 WP_029317911.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=335124 EQI27_RS12530 WP_004398628.1 2431041..2431472(-) (comGD) [Bacillus subtilis strain SRCM103923]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=335124 EQI27_RS12530 WP_004398628.1 2431041..2431472(-) (comGD) [Bacillus subtilis strain SRCM103923]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment