Detailed information NTG0033508

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: SEQ_RS02065
• Genome accession: NC_012471
• Coordinates: 388708..389196 (+)
• Length: 162 a.a.
• NCBI ID: WP_012679031.1
• Uniprot ID: C0MB80
• Organism: Streptococcus equi subsp. equi 4047
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	389800..391142	388708..389196	flank	604

Gene organization within MGE regions

Location: 388708..391142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SEQ_RS02065 (SEQ_0409)	ssbA	388708..389196 (+)	489	WP_012679031.1	single-stranded DNA-binding protein	Machinery gene
SEQ_RS02070 (SEQ_0410)	rpsR	389355..389594 (+)	240	WP_002983142.1	30S ribosomal protein S18	-
SEQ_RS02080 (SEQ_0413)	-	389800..391142 (+)	1343	WP_173292415.1	IS3 family transposase	-

Sequence

Protein

• Length: 162 a.a.
• Molecular weight: 17750.59 Da
• Isoelectric Point: 5.1951

>NTDB_id=33508 SEQ_RS02065 WP_012679031.1 388708..389196(+) (ssbA) [Streptococcus equi subsp. equi 4047]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDGSPFGGSNPMDISDDDL
PF

Nucleotide

• Length: 489 bp

>NTDB_id=33508 SEQ_RS02065 WP_012679031.1 388708..389196(+) (ssbA) [Streptococcus equi subsp. equi 4047]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACGGGACGTATTCAGACTCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGCTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGGAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: C0MB80

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	58.046	100	0.623
ssb	Latilactobacillus sakei subsp. sakei 23K	57.895	100	0.611
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.955	68.519	0.377