Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   EQH88_RS19740 Genome accession   NZ_CP035161
Coordinates   3770867..3770986 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain SRCM103862     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3765867..3775986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS19715 (EQH88_19715) albG 3766031..3766732 (+) 702 WP_069703620.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  EQH88_RS19720 (EQH88_19720) ywhL 3766738..3768114 (-) 1377 WP_069703619.1 YncE family protein -
  EQH88_RS19725 (EQH88_19725) ywhK 3768153..3769508 (-) 1356 WP_015250986.1 YncE family protein -
  EQH88_RS22035 (EQH88_19730) - 3769505..3769735 (-) 231 WP_069703618.1 hypothetical protein -
  EQH88_RS19735 (EQH88_19735) rapF 3769738..3770883 (+) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  EQH88_RS19740 (EQH88_19740) phrF 3770867..3770986 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  EQH88_RS21935 - 3771056..3771220 (-) 165 WP_248719425.1 hypothetical protein -
  EQH88_RS19745 (EQH88_19745) - 3771141..3771550 (+) 410 Protein_3821 YbaK/EbsC family protein -
  EQH88_RS19750 (EQH88_19750) speB 3771581..3772453 (-) 873 WP_003227545.1 agmatinase -
  EQH88_RS19755 (EQH88_19755) speE 3772514..3773344 (-) 831 WP_003227543.1 spermidine synthase -
  EQH88_RS19760 (EQH88_19760) pbpG 3773547..3775622 (+) 2076 WP_038427996.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=334995 EQH88_RS19740 WP_009968329.1 3770867..3770986(+) (phrF) [Bacillus subtilis strain SRCM103862]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=334995 EQH88_RS19740 WP_009968329.1 3770867..3770986(+) (phrF) [Bacillus subtilis strain SRCM103862]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment