Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FYA13_RS06925 Genome accession   NZ_CP043195
Coordinates   1438844..1439581 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O16:H48 strain PG20180062     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1433844..1444581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA13_RS06895 (FYA13_06895) yfiL 1434002..1434367 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  FYA13_RS06900 (FYA13_06900) aroF 1434577..1435647 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FYA13_RS06905 (FYA13_06905) tyrA 1435658..1436779 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FYA13_RS06910 (FYA13_06910) pheA 1436822..1437982 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  FYA13_RS06915 (FYA13_06915) pheL 1438081..1438128 (-) 48 WP_010723158.1 phe operon leader peptide -
  FYA13_RS06920 (FYA13_06920) raiA 1438232..1438573 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FYA13_RS06925 (FYA13_06925) comL 1438844..1439581 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FYA13_RS06930 (FYA13_06930) rluD 1439716..1440696 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FYA13_RS06935 (FYA13_06935) yfiH 1440693..1441424 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  FYA13_RS06940 (FYA13_06940) clpC 1441554..1444127 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=334990 FYA13_RS06925 WP_000197686.1 1438844..1439581(-) (comL) [Escherichia coli O16:H48 strain PG20180062]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=334990 FYA13_RS06925 WP_000197686.1 1438844..1439581(-) (comL) [Escherichia coli O16:H48 strain PG20180062]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment