Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   EQH88_RS18635 Genome accession   NZ_CP035161
Coordinates   3558334..3559023 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM103862     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3553334..3564023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS18600 (EQH88_18600) flgN 3553514..3553996 (-) 483 WP_014481048.1 flagellar protein FlgN -
  EQH88_RS18605 (EQH88_18605) flgM 3554012..3554278 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  EQH88_RS18610 (EQH88_18610) yvyF 3554359..3554778 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  EQH88_RS18615 (EQH88_18615) comFC 3554852..3555574 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  EQH88_RS18620 (EQH88_18620) comFB 3555538..3555834 (-) 297 WP_015483764.1 late competence protein ComFB -
  EQH88_RS18625 (EQH88_18625) comFA 3555894..3557285 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  EQH88_RS18630 (EQH88_18630) fakBA 3557391..3558236 (-) 846 WP_003227986.1 DegV family protein -
  EQH88_RS18635 (EQH88_18635) degU 3558334..3559023 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EQH88_RS18640 (EQH88_18640) degS 3559106..3560263 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  EQH88_RS18645 (EQH88_18645) yvyE 3560480..3561133 (+) 654 WP_003227979.1 YigZ family protein -
  EQH88_RS18650 (EQH88_18650) tagV 3561133..3562308 (+) 1176 WP_003227977.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  EQH88_RS18655 (EQH88_18655) tagO 3562381..3563457 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=334989 EQH88_RS18635 WP_003219701.1 3558334..3559023(-) (degU) [Bacillus subtilis strain SRCM103862]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=334989 EQH88_RS18635 WP_003219701.1 3558334..3559023(-) (degU) [Bacillus subtilis strain SRCM103862]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCAATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment