Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SZO_RS08500 Genome accession   NC_012470
Coordinates   1825998..1826486 (-) Length   162 a.a.
NCBI ID   WP_012678503.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1820998..1831486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS08480 (SZO_16280) - 1823486..1824430 (+) 945 WP_012678501.1 magnesium transporter CorA family protein -
  SZO_RS08485 - 1824455..1824658 (-) 204 WP_041790572.1 hypothetical protein -
  SZO_RS08490 (SZO_16290) - 1824689..1825339 (+) 651 WP_012678502.1 DUF1129 domain-containing protein -
  SZO_RS08495 (SZO_16300) rpsR 1825600..1825839 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  SZO_RS08500 (SZO_16310) ssb 1825998..1826486 (-) 489 WP_012678503.1 single-stranded DNA-binding protein Machinery gene
  SZO_RS08505 (SZO_16320) rpsF 1826505..1826795 (-) 291 WP_012678504.1 30S ribosomal protein S6 -
  SZO_RS08515 (SZO_16340) - 1827857..1828082 (-) 226 Protein_1652 HicB family protein -
  SZO_RS08520 (SZO_16350) mutY 1828171..1829319 (+) 1149 WP_012514994.1 A/G-specific adenine glycosylase -
  SZO_RS08530 (SZO_16370) - 1830097..1831332 (+) 1236 WP_012678507.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17812.62 Da        Isoelectric Point: 4.9008

>NTDB_id=33485 SZO_RS08500 WP_012678503.1 1825998..1826486(-) (ssb) [Streptococcus equi subsp. zooepidemicus]
MINNVVLVGRMTKDAELRYTSSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=33485 SZO_RS08500 WP_012678503.1 1825998..1826486(-) (ssb) [Streptococcus equi subsp. zooepidemicus]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTTCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACGGGACGTATTCAGACTCGT
AACTACGAAAACCAACAGGGACAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGCTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.48

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.471

100

0.617
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.856

68.519

0.383

Multiple sequence alignment