Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EQK21_RS03920 Genome accession   NZ_CP035110
Coordinates   771625..772098 (+) Length   157 a.a.
NCBI ID   WP_128530426.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain SRCM103465     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 766625..777098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK21_RS03885 (EQK21_03885) - 767095..767313 (+) 219 WP_128530419.1 helix-turn-helix transcriptional regulator -
  EQK21_RS10085 - 767344..767505 (+) 162 WP_164882252.1 hypothetical protein -
  EQK21_RS03890 (EQK21_03890) - 767567..768124 (+) 558 WP_128530420.1 helix-turn-helix transcriptional regulator -
  EQK21_RS03895 (EQK21_03895) - 768125..768382 (+) 258 WP_128530421.1 hypothetical protein -
  EQK21_RS03900 (EQK21_03900) - 768721..768993 (+) 273 WP_128530422.1 hypothetical protein -
  EQK21_RS03905 (EQK21_03905) - 768983..769954 (+) 972 WP_128530423.1 DUF1351 domain-containing protein -
  EQK21_RS03910 (EQK21_03910) - 769957..770946 (+) 990 WP_164882253.1 AAA family ATPase -
  EQK21_RS03915 (EQK21_03915) - 770946..771635 (+) 690 WP_128530425.1 putative HNHc nuclease -
  EQK21_RS03920 (EQK21_03920) ssb 771625..772098 (+) 474 WP_128530426.1 single-stranded DNA-binding protein Machinery gene
  EQK21_RS03925 (EQK21_03925) - 772130..772855 (+) 726 WP_128530427.1 DnaD domain protein -
  EQK21_RS03930 (EQK21_03930) - 773067..773597 (+) 531 WP_128530428.1 helix-turn-helix domain-containing protein -
  EQK21_RS03935 (EQK21_03935) - 773569..773775 (+) 207 WP_164882254.1 DUF6877 family protein -
  EQK21_RS10090 - 773775..773936 (+) 162 WP_164882255.1 hypothetical protein -
  EQK21_RS03940 (EQK21_03940) - 773933..774244 (+) 312 WP_128530430.1 VVA0879 family protein -
  EQK21_RS03945 (EQK21_03945) - 774441..774638 (+) 198 WP_128530431.1 hypothetical protein -
  EQK21_RS03950 (EQK21_03950) - 774869..775108 (+) 240 WP_128530432.1 hypothetical protein -
  EQK21_RS03955 (EQK21_03955) - 775606..775872 (+) 267 WP_128530433.1 hypothetical protein -
  EQK21_RS03960 (EQK21_03960) - 776057..776305 (+) 249 WP_128530434.1 hypothetical protein -
  EQK21_RS03965 (EQK21_03965) - 776302..776502 (+) 201 WP_128530435.1 hypothetical protein -
  EQK21_RS03970 (EQK21_03970) - 776499..776816 (+) 318 WP_206613208.1 MazG-like family protein -
  EQK21_RS10095 - 776816..776971 (+) 156 WP_164882256.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17513.30 Da        Isoelectric Point: 5.2262

>NTDB_id=334592 EQK21_RS03920 WP_128530426.1 771625..772098(+) (ssb) [Latilactobacillus curvatus strain SRCM103465]
MINRVVLVGRLTRDVDLKYTQSGAAVGQFSMAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGIDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRETTQNRPSEPAPAPNNQRPATKPTQQANNGYQNDPFSGGQPVDISDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=334592 EQK21_RS03920 WP_128530426.1 771625..772098(+) (ssb) [Latilactobacillus curvatus strain SRCM103465]
ATGATAAATAGAGTGGTACTTGTCGGCCGTCTCACGCGAGACGTCGATTTGAAGTATACCCAATCTGGTGCAGCGGTTGG
ACAATTCAGTATGGCGGTTAATCGCCAGTTTACGAATGCAAACGGTGATCGCGAAGCCGACTTCATTAACTGCGTTATTT
GGCGCAAATCAGCTGAGAACTTTGCCAACTTTACTAAAAAAGGTTCGCTAGTTGGCATCGATGGACGGCTACAAACAAGA
AATTATGAAAACCAACAGGGACAACGTGTTTACGTAACTGAGGTAGTAGTAGATAATTTCTCATTGCTTGAATCACGCGA
GACAACGCAGAACAGACCAAGTGAACCAGCGCCAGCACCAAATAACCAGCGACCAGCAACTAAGCCAACGCAACAAGCCA
ATAACGGTTACCAGAATGACCCGTTTAGTGGCGGTCAACCCGTCGATATTTCAGATGATGACCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

75.294

100

0.815
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.488

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

67.516

0.382

Multiple sequence alignment