Detailed information NTG0334588

Bioinformatically predicted

Overview

• Name: comGB
• Type: Machinery gene
• Locus tag: EQK21_RS03780
• Genome accession: NZ_CP035110
• Coordinates: 751757..752506 (+)
• Length: 249 a.a.
• NCBI ID: WP_128530404.1
• Uniprot ID: -
• Organism: Latilactobacillus curvatus strain SRCM103465
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 746757..757506

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQK21_RS03750 (EQK21_03750)	-	748056..748535 (+)	480	WP_128530400.1	hypothetical protein	-
EQK21_RS03760 (EQK21_03760)	-	748987..749364 (-)	378	WP_128530401.1	hypothetical protein	-
EQK21_RS03765 (EQK21_03765)	-	749467..749967 (+)	501	WP_128530402.1	VanZ family protein	-
EQK21_RS03770 (EQK21_03770)	-	750057..750788 (+)	732	WP_004270897.1	YebC/PmpR family DNA-binding transcriptional regulator	-
EQK21_RS03775 (EQK21_03775)	comGA	750892..751767 (+)	876	WP_128530403.1	competence type IV pilus ATPase ComGA	Machinery gene
EQK21_RS03780 (EQK21_03780)	comGB	751757..752506 (+)	750	WP_128530404.1	type II secretion system F family protein	Machinery gene
EQK21_RS03785 (EQK21_03785)	comGB	752550..752756 (+)	207	WP_054644028.1	hypothetical protein	Machinery gene
EQK21_RS03790 (EQK21_03790)	comGC	752753..753061 (+)	309	WP_004270901.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
EQK21_RS03795 (EQK21_03795)	-	753042..753485 (+)	444	WP_089556486.1	type II secretion system protein	-
EQK21_RS10080	-	753550..753777 (+)	228	WP_164882251.1	hypothetical protein	-
EQK21_RS03800 (EQK21_03800)	-	753725..754228 (+)	504	WP_164882291.1	competence type IV pilus minor pilin ComGF	-
EQK21_RS03805 (EQK21_03805)	-	754206..754529 (+)	324	WP_039099486.1	hypothetical protein	-
EQK21_RS03810 (EQK21_03810)	-	754645..755664 (+)	1020	WP_338323057.1	class I SAM-dependent methyltransferase	-
EQK21_RS03815 (EQK21_03815)	-	755686..756879 (+)	1194	WP_128530409.1	acetate kinase	-
EQK21_RS03820 (EQK21_03820)	-	756939..757391 (+)	453	WP_128530410.1	laaL	-

Sequence

Protein

• Length: 249 a.a.
• Molecular weight: 28552.84 Da
• Isoelectric Point: 10.1340

>NTDB_id=334588 EQK21_RS03780 WP_128530404.1 751757..752506(+) (comGB) [Latilactobacillus curvatus strain SRCM103465]
MKTKTTVQFNTEFMLLLGRLLQNGFSLQQALEFMPIVFPTQKQWLHQVQTGLEAGKRLAPSLASVSFPAHLVAQIELTEL
QGNLCECLLHLGQLQRIQQKRRRELVGVIAYPCFLLLFLGALIGMMQIYLFPEIAQFNPTTSATSPLQLFFRVMGTFVIM
AGALISVYLFRWHRRPLLQRLAAAFRWPFIGKTLQAYYQYCLLFDLATCLNNGLNLSEMHQLTHRLAKTSWLVQLMQQLE
TAVQKGARY

Nucleotide

• Length: 750 bp

>NTDB_id=334588 EQK21_RS03780 WP_128530404.1 751757..752506(+) (comGB) [Latilactobacillus curvatus strain SRCM103465]
ATGAAGACTAAAACCACTGTTCAATTCAATACTGAATTTATGTTGCTGTTAGGTCGCTTACTGCAAAATGGTTTTTCTTT
ACAACAAGCACTTGAGTTCATGCCGATTGTTTTTCCGACACAAAAGCAGTGGCTGCATCAGGTGCAAACTGGGTTAGAAG
CAGGAAAACGACTAGCACCAAGCTTAGCGTCGGTTTCATTTCCAGCACACCTTGTTGCGCAGATTGAATTGACTGAGTTG
CAGGGAAACTTATGCGAGTGTCTGTTGCATCTTGGTCAATTACAACGAATTCAACAGAAACGGCGTAGAGAGTTAGTTGG
CGTAATTGCCTATCCTTGTTTTCTACTCCTTTTTCTCGGGGCGTTGATTGGGATGATGCAGATTTATCTTTTTCCGGAAA
TCGCGCAGTTTAACCCAACAACTTCGGCGACATCACCATTACAACTATTTTTTAGAGTGATGGGGACATTCGTTATTATG
GCTGGTGCTCTGATTAGTGTGTATTTATTCCGTTGGCATCGGCGACCGCTATTACAACGATTGGCGGCGGCATTTAGATG
GCCGTTCATCGGTAAAACGTTGCAGGCTTACTATCAGTATTGCTTATTATTTGATTTAGCGACTTGCCTGAATAACGGCT
TAAACTTGTCCGAAATGCATCAGCTTACACATCGTTTGGCGAAAACATCGTGGCTCGTACAATTAATGCAACAACTTGAA
ACGGCTGTCCAAAAGGGGGCACGCTATTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (13-132)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGB	Latilactobacillus sakei subsp. sakei 23K	54.4	100	0.546