Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | EQK21_RS03790 | Genome accession | NZ_CP035110 |
| Coordinates | 752753..753061 (+) | Length | 102 a.a. |
| NCBI ID | WP_004270901.1 | Uniprot ID | A0AAJ0LFY3 |
| Organism | Latilactobacillus curvatus strain SRCM103465 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 747753..758061
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQK21_RS03750 (EQK21_03750) | - | 748056..748535 (+) | 480 | WP_128530400.1 | hypothetical protein | - |
| EQK21_RS03760 (EQK21_03760) | - | 748987..749364 (-) | 378 | WP_128530401.1 | hypothetical protein | - |
| EQK21_RS03765 (EQK21_03765) | - | 749467..749967 (+) | 501 | WP_128530402.1 | VanZ family protein | - |
| EQK21_RS03770 (EQK21_03770) | - | 750057..750788 (+) | 732 | WP_004270897.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| EQK21_RS03775 (EQK21_03775) | comGA | 750892..751767 (+) | 876 | WP_128530403.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EQK21_RS03780 (EQK21_03780) | comGB | 751757..752506 (+) | 750 | WP_128530404.1 | type II secretion system F family protein | Machinery gene |
| EQK21_RS03785 (EQK21_03785) | comGB | 752550..752756 (+) | 207 | WP_054644028.1 | hypothetical protein | Machinery gene |
| EQK21_RS03790 (EQK21_03790) | comGC | 752753..753061 (+) | 309 | WP_004270901.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| EQK21_RS03795 (EQK21_03795) | - | 753042..753485 (+) | 444 | WP_089556486.1 | type II secretion system protein | - |
| EQK21_RS10080 | - | 753550..753777 (+) | 228 | WP_164882251.1 | hypothetical protein | - |
| EQK21_RS03800 (EQK21_03800) | - | 753725..754228 (+) | 504 | WP_164882291.1 | competence type IV pilus minor pilin ComGF | - |
| EQK21_RS03805 (EQK21_03805) | - | 754206..754529 (+) | 324 | WP_039099486.1 | hypothetical protein | - |
| EQK21_RS03810 (EQK21_03810) | - | 754645..755664 (+) | 1020 | WP_338323057.1 | class I SAM-dependent methyltransferase | - |
| EQK21_RS03815 (EQK21_03815) | - | 755686..756879 (+) | 1194 | WP_128530409.1 | acetate kinase | - |
| EQK21_RS03820 (EQK21_03820) | - | 756939..757391 (+) | 453 | WP_128530410.1 | laaL | - |
Sequence
Protein
Download Length: 102 a.a. Molecular weight: 11238.13 Da Isoelectric Point: 9.6264
>NTDB_id=334590 EQK21_RS03790 WP_004270901.1 752753..753061(+) (comGC) [Latilactobacillus curvatus strain SRCM103465]
MKKKRNAFTLIEMVVVLAVIAMLVLLIAPNLMHQKETAEQKTDTALVATIQTQVELAEDDGKTVSSLADLASGEKYLTNN
QVKQAEKRGITIKDNKVVQNTK
MKKKRNAFTLIEMVVVLAVIAMLVLLIAPNLMHQKETAEQKTDTALVATIQTQVELAEDDGKTVSSLADLASGEKYLTNN
QVKQAEKRGITIKDNKVVQNTK
Nucleotide
Download Length: 309 bp
>NTDB_id=334590 EQK21_RS03790 WP_004270901.1 752753..753061(+) (comGC) [Latilactobacillus curvatus strain SRCM103465]
ATGAAGAAGAAAAGAAATGCATTTACATTGATCGAAATGGTCGTTGTGCTAGCTGTGATAGCAATGTTAGTCTTGTTAAT
TGCACCTAATTTAATGCATCAGAAAGAGACAGCTGAGCAAAAAACGGATACGGCTCTAGTGGCAACGATTCAAACACAAG
TTGAATTAGCTGAGGATGACGGTAAAACGGTGTCGAGTCTAGCCGATTTAGCATCAGGTGAAAAATATTTAACCAATAAT
CAGGTTAAACAAGCTGAAAAACGCGGCATAACAATTAAGGATAATAAAGTTGTTCAAAATACAAAATAA
ATGAAGAAGAAAAGAAATGCATTTACATTGATCGAAATGGTCGTTGTGCTAGCTGTGATAGCAATGTTAGTCTTGTTAAT
TGCACCTAATTTAATGCATCAGAAAGAGACAGCTGAGCAAAAAACGGATACGGCTCTAGTGGCAACGATTCAAACACAAG
TTGAATTAGCTGAGGATGACGGTAAAACGGTGTCGAGTCTAGCCGATTTAGCATCAGGTGAAAAATATTTAACCAATAAT
CAGGTTAAACAAGCTGAAAAACGCGGCATAACAATTAAGGATAATAAAGTTGTTCAAAATACAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Latilactobacillus sakei subsp. sakei 23K |
60 |
98.039 |
0.588 |