Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   EPY81_RS02405 Genome accession   NZ_CP035109
Coordinates   482608..483417 (-) Length   269 a.a.
NCBI ID   WP_002117088.1    Uniprot ID   A0A013UCU5
Organism   Acinetobacter pittii strain NQ-003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477608..488417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPY81_RS02390 (EPY81_02400) pilE 477827..478252 (-) 426 WP_002117055.1 type IV pilin protein Machinery gene
  EPY81_RS02395 (EPY81_02405) pilY2 478249..478731 (-) 483 WP_002116770.1 type IV pilin protein Machinery gene
  EPY81_RS02400 (EPY81_02410) pilY1 478742..482596 (-) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  EPY81_RS02405 (EPY81_02415) pilX 482608..483417 (-) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EPY81_RS02410 (EPY81_02420) pilW 483414..484415 (-) 1002 WP_002116811.1 PilW family protein Machinery gene
  EPY81_RS02415 (EPY81_02425) pilV 484415..484975 (-) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  EPY81_RS02420 (EPY81_02430) fimU 484969..485442 (-) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  EPY81_RS02425 (EPY81_02435) ispH 485612..486562 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EPY81_RS02430 (EPY81_02440) gmk 486685..487314 (+) 630 WP_002116973.1 guanylate kinase -
  EPY81_RS02435 (EPY81_02445) rpoZ 487387..487665 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  EPY81_RS02440 (EPY81_02450) - 487704..487859 (+) 156 Protein_467 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28518.31 Da        Isoelectric Point: 7.2645

>NTDB_id=334538 EPY81_RS02405 WP_002117088.1 482608..483417(-) (pilX) [Acinetobacter pittii strain NQ-003]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=334538 EPY81_RS02405 WP_002117088.1 482608..483417(-) (pilX) [Acinetobacter pittii strain NQ-003]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGGGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTGAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTGAAAGAGCACGAAAGTAATCCCGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTTGTCGAAGATGGCGGCGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCTGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTGAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013UCU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914

Multiple sequence alignment