Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FXN59_RS09645 Genome accession   NZ_CP043004
Coordinates   1852395..1854437 (-) Length   680 a.a.
NCBI ID   WP_148327356.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1847395..1859437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS09630 (FXN59_09630) - 1848924..1849334 (+) 411 WP_148327357.1 YhcB family protein -
  FXN59_RS09635 (FXN59_09635) - 1849525..1850907 (+) 1383 WP_005545932.1 Do family serine endopeptidase -
  FXN59_RS09640 (FXN59_09640) ompA 1851098..1852168 (-) 1071 WP_148325173.1 porin OmpA -
  FXN59_RS09645 (FXN59_09645) uvrB 1852395..1854437 (-) 2043 WP_148327356.1 excinuclease ABC subunit UvrB Machinery gene
  FXN59_RS09655 (FXN59_09655) zevB 1855049..1856080 (-) 1032 WP_005551275.1 zinc transporter permease subunit ZevB -
  FXN59_RS09660 (FXN59_09660) zevA 1856095..1856760 (-) 666 WP_012821052.1 zinc transporter binding subunit ZevA -
  FXN59_RS09665 (FXN59_09665) ettA 1857138..1858808 (+) 1671 WP_151294818.1 energy-dependent translational throttle protein EttA -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 77412.88 Da        Isoelectric Point: 5.2729

>NTDB_id=334165 FXN59_RS09645 WP_148327356.1 1852395..1854437(-) (uvrB) [Aggregatibacter actinomycetemcomitans strain HK_973]
MSEKINTKPFILHSHFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMVLAPNKTLAAQLYA
EMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
KMMLHLQQGAIINQRQILAKLAELQYTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDGEIERLSLFDPLTGSSF
GTVPRFTVYPKTHYVTPRERILDAIEKIKLELAQRREYFTKENKLLEEQRISQRTQFDIEMMNELGYCSGIENYSRYLSG
RNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGGEIIDQVVRPTGLLDPQIEIRPVSIQVDDLLSEARHRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYAD
NITKSMEKAITETNRRREKQAKYNEAQGIAPQALNKKVGELLDIGQGANQKAKANKQRGKTVAEPTALYTTPKSPKEYQQ
QIKKLEQQMYKFAQDLEFEKAAATRDQLQQLRESFMLSSE

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=334165 FXN59_RS09645 WP_148327356.1 1852395..1854437(-) (uvrB) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGTCAGAAAAAATTAACACTAAACCTTTTATTCTTCATTCCCATTTCAAACCCTCCGGCGACCAACCCCAGGCCATCGC
AAAATTAGCCGAAAATTTAGAAGATGGCTTGGCACATCAAACCTTGCTTGGGGTAACAGGTTCAGGCAAAACCTTTACCA
TTGCCAATGTGATTGCGCAATTGAATCGCCCTGCGATGGTGTTGGCACCGAACAAAACCCTTGCCGCCCAGCTTTATGCC
GAAATGAAGGATTTTTTCCCGGAAAATGCGGTGGAATATTTTGTTTCTTACTATGATTATTATCAGCCCGAAGCCTATGT
GCCGAGTAGCGATACTTTTATTGAGAAAGACGCGTCTATTAATGATCAAATTGAACAAATGCGACTTTCCGCCACAAAAT
CTTTCTTAGAACGGCGCGATACTATTGTAGTGGCGTCCGTGTCCGCTATTTATGGCTTAGGGGACCCCGATTCCTATTTA
AAAATGATGCTGCATTTGCAACAAGGCGCGATTATTAATCAGCGCCAAATCTTGGCAAAATTGGCAGAGTTGCAATATAC
CCGTAACGATCAGGCGTTTCAGCGCGGAACGTTCCGTGTGCGGGGAGAAATTATTGATATTTTCCCGGCGGAATCGGACG
ATCGAGCGGTACGTATCGAATTATTTGATGGTGAAATCGAACGCTTGAGTTTATTTGATCCGCTCACCGGCAGCAGCTTC
GGCACGGTGCCGCGCTTTACCGTTTATCCGAAAACCCACTATGTTACACCGCGTGAGCGAATTTTAGACGCTATCGAAAA
AATTAAACTGGAATTGGCGCAACGGCGGGAGTATTTCACTAAAGAAAATAAATTATTGGAAGAGCAGCGTATCAGCCAAC
GTACCCAATTTGATATTGAGATGATGAATGAACTCGGTTATTGCTCGGGCATTGAAAACTATTCCCGCTACTTATCAGGT
AGAAATGAGGGCGAACCGCCACCGACCTTATTTGATTATATGCCGTCTGACGCAATTTTGATTATTGACGAATCCCACGT
CACCGTGCCACAAATCGGTGGGATGTATCGCGGCGATCGCTCCCGTAAAGAAACCTTGGTGGAATATGGTTTTCGTCTGC
CTTCTGCGTTGGATAACCGTCCGTTACGTTTTGAAGAATTTGAACGTTTGGCACCGCAAACCATTTATGTTTCCGCCACA
CCGGGACCTTATGAATTGGAAAAATCCGGTGGGGAAATTATCGACCAAGTAGTGCGTCCGACAGGTTTGCTTGATCCGCA
AATTGAAATTCGCCCGGTATCTATTCAGGTGGATGATTTACTTTCCGAAGCACGCCATAGAGCGGATAAAAATGAACGCG
TTTTAGTGACGACATTAACGAAGAAAATGGCGGAAGATCTTACCGACTATTTAGATGAACATGGTATTCGCGTACGTTAT
TTGCATTCTGATATTGATACCGTCGAACGGGTGGAAATTATTCGTGATTTGCGCTTGGGGGAATTTGATGTTTTAGTCGG
CATTAACTTATTACGGGAAGGTTTAGATATTCCGGAAGTGTCTTTAGTGGCAATTTTAGATGCGGATAAAGAAGGTTTTT
TACGTTCCGAGCGTTCATTAATTCAAACGATCGGACGTGCTGCGCGAAATTTACACGGAAAAGCCATTTTGTATGCGGAT
AATATAACCAAATCAATGGAGAAAGCTATTACCGAAACCAATCGTCGGCGTGAGAAACAAGCAAAATATAATGAAGCACA
GGGCATTGCGCCGCAGGCATTAAATAAAAAGGTAGGCGAGTTGTTAGATATCGGTCAGGGTGCCAATCAGAAAGCCAAAG
CCAATAAACAACGTGGAAAAACGGTGGCAGAACCGACCGCACTTTATACAACGCCGAAATCACCGAAAGAATATCAGCAA
CAGATTAAGAAACTGGAGCAGCAAATGTATAAATTTGCACAGGATTTGGAATTTGAGAAAGCTGCTGCAACGCGCGATCA
GTTACAACAATTACGGGAAAGTTTTATGTTATCAAGTGAGTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(640-673)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

UvrB interaction domain (UvrB_inter)

(164-254)

Type III restriction enzyme, res subunit (ResIII)

(17-102)

Ultra-violet resistance protein B (UvrB)

(557-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.845

98.824

0.562
  uvrB Streptococcus pneumoniae R6

56.845

98.824

0.562
  uvrB Streptococcus pneumoniae D39

56.845

98.824

0.562

Multiple sequence alignment