Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FXN59_RS03300 Genome accession   NZ_CP043004
Coordinates   604210..606291 (-) Length   693 a.a.
NCBI ID   WP_151294237.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 599210..611291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS12025 - 599448..599645 (-) 198 WP_187372988.1 hypothetical protein -
  FXN59_RS03270 (FXN59_03270) - 599664..599765 (-) 102 WP_079254132.1 transposase -
  FXN59_RS03290 (FXN59_03290) murI 602862..603689 (-) 828 WP_148323302.1 glutamate racemase -
  FXN59_RS03295 (FXN59_03295) - 603720..604217 (-) 498 WP_148323304.1 chorismate lyase -
  FXN59_RS03300 (FXN59_03300) recG 604210..606291 (-) 2082 WP_151294237.1 ATP-dependent DNA helicase RecG Machinery gene
  FXN59_RS03305 (FXN59_03305) spoT 606293..608416 (-) 2124 WP_151294239.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FXN59_RS03310 (FXN59_03310) rpoZ 608462..608728 (-) 267 WP_005538631.1 DNA-directed RNA polymerase subunit omega -
  FXN59_RS03315 (FXN59_03315) gmk 608785..609423 (-) 639 WP_151294241.1 guanylate kinase -
  FXN59_RS03320 (FXN59_03320) gap 609665..610669 (+) 1005 WP_005568476.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77486.05 Da        Isoelectric Point: 8.0892

>NTDB_id=334142 FXN59_RS03300 WP_151294237.1 604210..606291(-) (recG) [Aggregatibacter actinomycetemcomitans strain HK_973]
MSTQLLDAIPLTAISGVGAAVAEKLGKLGIFNLQDLLFHLPLRYEDRTRITPIADLQAEQYATIEGVVQSSEVQFGRRPM
LMVYLSDGTAKLALRFFNFNAGMKNSLQPGARVKAFGEVRRGRFMAEIHHPEYQIIHDNKPLVLAETLTPIYPATEGLKQ
TALRKLIGQALLVLDKTPIAELLPAECNPHPFDLKSAIQFLHNPSPDVSLTTLEEGKHPAQQRLIFEELLAYNLAMQKVR
SGIQANFAEPLQYQSDLKACFLAQLPFQPTNAQLRVTEDIERDVAQPYPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAVNFRRWFEPLGIQVGWLAGKVKGKQRVAELEKIKSGAVQMIMGTHALFQEEVEFHRLSLVIVDEQH
RFGVHQRLMLREKGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRRAEIIERVNVACT
QEKRQAYWVCTLIDESEVLEAQAAEAVAEDLRKILPHLRIGLVHGRMKPNEKQAVMAQFKLVELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQ
TGITEFKVANLMRDRKMLPTVQFYAKQLVQKYPQTADLLIRRWLNNREIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=334142 FXN59_RS03300 WP_151294237.1 604210..606291(-) (recG) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGAGCACCCAATTATTAGATGCGATTCCGTTAACGGCAATTTCCGGTGTCGGTGCGGCTGTGGCGGAAAAGTTAGGTAA
ATTGGGGATTTTCAATCTGCAAGATCTGTTATTTCACCTTCCCCTTCGTTATGAAGATCGCACCCGCATCACACCCATCG
CCGATCTGCAGGCTGAACAGTACGCCACCATTGAAGGCGTCGTGCAAAGTAGCGAAGTTCAATTCGGGCGTCGCCCGATG
TTGATGGTCTATCTTTCCGACGGTACCGCCAAATTGGCGTTGCGCTTTTTTAATTTTAACGCCGGTATGAAAAACAGCTT
GCAACCCGGTGCTCGGGTGAAAGCGTTTGGTGAAGTGCGCCGCGGGCGTTTCATGGCGGAAATTCATCATCCCGAATATC
AAATTATTCATGACAATAAACCGCTGGTTCTGGCGGAAACCCTCACGCCTATTTATCCCGCTACGGAAGGGCTTAAACAA
ACCGCTTTGCGAAAATTAATTGGGCAAGCTTTGCTGGTATTGGACAAAACGCCCATAGCCGAATTGTTACCGGCGGAATG
TAATCCGCATCCTTTTGATTTAAAATCCGCCATTCAATTCTTACATAACCCGTCACCCGACGTGTCATTAACGACCTTGG
AAGAAGGCAAACATCCTGCCCAACAACGGCTGATTTTTGAAGAATTGCTGGCATATAACCTGGCGATGCAAAAAGTGCGG
TCAGGAATTCAAGCGAATTTTGCCGAGCCTTTGCAGTATCAATCGGATTTAAAAGCATGTTTTTTAGCGCAGTTGCCGTT
TCAGCCGACAAATGCACAGTTGCGTGTGACGGAAGATATTGAACGGGATGTGGCGCAACCTTACCCGATGATGCGTCTGG
TGCAGGGGGATGTCGGCTCCGGTAAAACATTAGTGGCGGCGTTAGCGGCACTGCTTGCCATTGATAACGGCAAACAGGTG
GCATTGATGGCGCCGACGGAAATCTTAGCGGAACAGCATGCCGTGAACTTCCGCCGTTGGTTTGAACCGCTTGGTATTCA
AGTGGGATGGCTGGCAGGAAAAGTCAAAGGTAAACAACGGGTTGCCGAACTGGAAAAAATAAAAAGCGGCGCGGTACAAA
TGATAATGGGGACGCACGCGTTATTTCAGGAAGAGGTGGAATTTCATCGTTTGAGCTTGGTGATTGTTGACGAACAGCAC
CGTTTCGGCGTGCACCAACGACTCATGCTGCGGGAAAAAGGCAATCAGGCAGGCGTGTATCCTCATCAGTTAATCATGAC
CGCCACACCGATTCCGCGTACCCTTGCCATGACCGTATATGCGGATTTGGATACCTCGATTATCGACGAATTGCCACCGG
GACGCACGCCGATTACCACCATTGCAATTTCCGAAGATCGTCGTGCAGAGATTATCGAGCGGGTGAATGTGGCGTGTACG
CAGGAAAAACGCCAGGCTTACTGGGTTTGTACTCTGATTGATGAATCGGAAGTCTTGGAAGCGCAGGCGGCGGAAGCGGT
GGCGGAAGATCTCCGTAAAATTCTACCGCACTTACGCATCGGCTTGGTGCACGGGCGAATGAAACCGAATGAAAAACAAG
CGGTGATGGCGCAGTTTAAACTTGTCGAATTGGATTTATTGGTTGCTACGACGGTGATTGAAGTGGGCGTGGATGTGCCG
AACGCCAGTTTAATGATTATTGAAAACGCCGAGCGTCTGGGCTTGTCCCAGCTCCATCAGTTACGCGGGCGGGTTGGGCG
TGGCAGTACCGCCTCTTTTTGTGTGTTAATGTATAAACCGCCGCTCGGCAAGATTTCGCAAAAACGCTTACAAGTCATGC
GTGACACGCAGGATGGCTTTGTGATTTCGGAAAAAGATCTGGAAATCCGCGGGCCGGGGGAGGTACTTGGCACGAAACAA
ACAGGGATTACCGAATTTAAAGTGGCGAATCTTATGCGTGATCGCAAAATGCTGCCGACAGTGCAGTTTTATGCAAAACA
ACTAGTACAGAAATATCCGCAAACGGCGGACTTGTTGATTCGCCGCTGGCTAAATAATCGTGAGATTTATAGCAATGCCT
GA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(14-170)

Helicase conserved C-terminal domain (Helicase_C)

(478-588)

DEAD/DEAH box helicase (DEAD)

(293-431)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.107

96.97

0.476
  recG Bacillus subtilis subsp. subtilis str. 168

40.648

97.98

0.398
  recG/mmsA Streptococcus pneumoniae R6

40

95.96

0.384
  recG/mmsA Streptococcus pneumoniae R36A

40

95.96

0.384