Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FXN58_RS00730 Genome accession   NZ_CP043003
Coordinates   145854..147935 (-) Length   693 a.a.
NCBI ID   WP_148323306.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 140854..152935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS00720 (FXN58_00720) murI 144506..145333 (-) 828 WP_148323302.1 glutamate racemase -
  FXN58_RS00725 (FXN58_00725) - 145364..145861 (-) 498 WP_148323304.1 chorismate lyase -
  FXN58_RS00730 (FXN58_00730) recG 145854..147935 (-) 2082 WP_148323306.1 ATP-dependent DNA helicase RecG Machinery gene
  FXN58_RS00735 (FXN58_00735) spoT 147937..150060 (-) 2124 WP_148323308.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FXN58_RS00740 (FXN58_00740) rpoZ 150106..150372 (-) 267 WP_005538631.1 DNA-directed RNA polymerase subunit omega -
  FXN58_RS00745 (FXN58_00745) gmk 150429..151067 (-) 639 WP_148323310.1 guanylate kinase -
  FXN58_RS00750 (FXN58_00750) gap 151309..152313 (+) 1005 WP_005568476.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77482.04 Da        Isoelectric Point: 8.0892

>NTDB_id=334079 FXN58_RS00730 WP_148323306.1 145854..147935(-) (recG) [Aggregatibacter actinomycetemcomitans strain HK_907]
MSTQLLDAIPLTAISGVGAAVAEKLGKLGIFNLQDLLFHLPLRYEDRTRITPIADLQAEQYATIEGVVQSSEVQFGRRPM
LMVYLSDGTAKLALRFFNFNAGMKNSLQPGARVKAFGEVRRGRFMAEIHHPEYQIIHDNKPLVLAETLTPIYPATEGLKQ
TALRKLIGQALLVLDKTPIAELLPAECNPHPFDLKSAIQFLHNPSPDVSLTTLEEGKHPAQQRLIFEELLAYNLAMQKVR
SGIQANFAEPLQYQSDLKACFLAQLPFQPTNAQLRVTEDIERDVAQPYPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAVNFRRWFEPLGIQVGWLAGKVKGKQRVAELEKIKSGAVQMIVGTHALFQEEVEFHRLSLVIVDEQH
RFGVHQRLMLREKGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRRAEIIERVNVACT
QEKRQAYWVCTLIDESEVLEAQAAEAVVEDLRKILPHLRIGLVHGRMKPNEKQAVMAQFKLVELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQ
TGITEFKVANLMRDRKMLPTVQFYAKQLVQKYPQTADLLIRRWLNNREIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=334079 FXN58_RS00730 WP_148323306.1 145854..147935(-) (recG) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGAGCACCCAATTATTAGATGCGATTCCGTTAACGGCAATTTCCGGTGTCGGTGCGGCTGTGGCGGAAAAGTTAGGTAA
ATTGGGGATTTTCAATCTGCAAGATCTGTTATTTCACCTTCCCCTTCGTTATGAAGATCGCACCCGCATCACACCCATCG
CCGATCTGCAGGCTGAACAGTACGCCACCATTGAAGGCGTCGTGCAAAGTAGCGAAGTTCAATTCGGGCGTCGCCCGATG
TTGATGGTCTATCTTTCCGACGGTACCGCCAAATTGGCGTTGCGCTTTTTTAATTTTAACGCCGGTATGAAAAACAGCTT
GCAACCCGGTGCTCGGGTGAAAGCGTTTGGTGAAGTGCGCCGCGGGCGTTTCATGGCGGAAATTCATCATCCCGAATATC
AAATTATTCATGACAATAAACCGCTGGTTCTGGCGGAAACCCTCACGCCTATTTATCCCGCTACGGAAGGGCTTAAACAA
ACCGCTTTGCGAAAATTAATTGGGCAAGCTTTGCTGGTATTGGACAAAACGCCCATAGCCGAATTGTTACCGGCGGAATG
TAATCCGCATCCTTTTGATTTAAAATCCGCCATTCAATTCTTACATAACCCGTCACCCGACGTGTCATTAACGACCTTGG
AAGAAGGCAAACATCCTGCCCAACAACGGCTGATTTTTGAAGAATTGCTGGCATATAACCTAGCGATGCAAAAAGTGCGG
TCAGGAATTCAAGCGAATTTTGCCGAGCCTTTGCAGTATCAATCGGATTTAAAAGCATGTTTTTTAGCGCAGTTGCCGTT
TCAGCCGACAAATGCACAGTTGCGTGTGACGGAAGATATTGAACGGGATGTGGCGCAACCTTACCCGATGATGCGTCTGG
TGCAGGGGGATGTCGGCTCCGGTAAAACATTAGTGGCGGCGTTAGCGGCACTGCTTGCCATTGATAACGGCAAACAGGTG
GCATTGATGGCGCCGACGGAAATCTTAGCGGAACAGCATGCCGTGAACTTCCGCCGTTGGTTTGAACCGCTTGGTATTCA
AGTGGGATGGCTGGCAGGAAAAGTCAAAGGTAAACAACGGGTCGCCGAACTGGAAAAAATAAAAAGCGGCGCGGTACAAA
TGATAGTGGGGACGCACGCGTTATTTCAGGAAGAGGTGGAATTTCATCGTTTGAGCTTGGTGATTGTTGACGAACAGCAC
CGTTTCGGCGTGCACCAACGACTCATGCTGCGGGAAAAAGGCAATCAGGCAGGCGTGTATCCTCATCAGTTAATCATGAC
CGCCACACCGATTCCGCGTACCCTTGCCATGACCGTATATGCGGATTTGGATACCTCGATTATCGACGAATTGCCACCGG
GACGCACGCCGATTACCACCATTGCAATTTCCGAAGATCGTCGTGCAGAGATTATCGAGCGGGTGAATGTGGCGTGTACG
CAGGAAAAACGCCAGGCTTACTGGGTTTGTACTCTGATTGATGAATCGGAAGTCTTGGAAGCGCAGGCGGCGGAAGCGGT
GGTGGAAGATCTCCGTAAAATTCTACCGCACTTACGCATCGGCTTGGTGCACGGGCGAATGAAACCGAATGAAAAACAAG
CGGTGATGGCGCAGTTTAAACTTGTCGAATTGGATTTATTGGTTGCTACGACGGTGATTGAAGTGGGCGTGGATGTGCCG
AACGCCAGTTTAATGATTATTGAAAACGCCGAGCGTCTGGGCTTGTCCCAGCTCCATCAGTTACGCGGGCGGGTTGGGCG
TGGCAGTACCGCCTCTTTTTGTGTGTTAATGTATAAACCGCCGCTCGGCAAGATTTCGCAAAAACGCTTACAAGTCATGC
GTGACACGCAGGATGGCTTTGTGATTTCGGAAAAAGATCTGGAAATCCGCGGGCCGGGGGAGGTACTTGGCACGAAACAA
ACAGGGATTACCGAATTTAAAGTGGCGAATCTTATGCGTGATCGCAAAATGCTGCCGACAGTGCAGTTTTATGCAAAACA
ACTAGTACAGAAATATCCGCAAACGGCGGACTTATTGATTCGCCGCTGGCTAAATAATCGTGAGATTTATAGCAATGCCT
GA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(478-588)

RecG wedge domain (RecG_wedge)

(14-170)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-675)

DEAD/DEAH box helicase (DEAD)

(293-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.256

96.97

0.478
  recG Bacillus subtilis subsp. subtilis str. 168

40.795

97.98

0.4
  recG/mmsA Streptococcus pneumoniae R6

40

95.96

0.384
  recG/mmsA Streptococcus pneumoniae R36A

40

95.96

0.384