Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FWK45_RS07925 Genome accession   NZ_CP043001
Coordinates   1685302..1686009 (-) Length   235 a.a.
NCBI ID   WP_011608614.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-04     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1680302..1691009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK45_RS07895 (FWK45_07895) sodA 1680613..1681242 (+) 630 WP_132994691.1 superoxide dismutase [Mn] -
  FWK45_RS07900 (FWK45_07900) hpt 1681371..1681910 (-) 540 WP_011608620.1 hypoxanthine phosphoribosyltransferase -
  FWK45_RS07905 (FWK45_07905) raiA 1682114..1682431 (-) 318 WP_132994692.1 ribosome-associated translation inhibitor RaiA -
  FWK45_RS07910 (FWK45_07910) - 1682667..1684043 (-) 1377 WP_132994693.1 sodium:alanine symporter family protein -
  FWK45_RS07915 (FWK45_07915) yacG 1684444..1684638 (-) 195 WP_011608616.1 DNA gyrase inhibitor YacG -
  FWK45_RS07920 (FWK45_07920) coaE 1684635..1685282 (-) 648 WP_011608615.1 dephospho-CoA kinase -
  FWK45_RS07925 (FWK45_07925) pilD 1685302..1686009 (-) 708 WP_011608614.1 A24 family peptidase Machinery gene
  FWK45_RS07930 (FWK45_07930) pilC 1686006..1687226 (-) 1221 WP_011608613.1 type II secretion system F family protein Machinery gene
  FWK45_RS07950 (FWK45_07950) gltX 1687915..1689357 (+) 1443 WP_132994694.1 glutamate--tRNA ligase -
  FWK45_RS07960 (FWK45_07960) - 1689696..1690430 (-) 735 WP_148418631.1 4'-phosphopantetheinyl transferase superfamily protein -
  FWK45_RS07965 (FWK45_07965) - 1690433..1690711 (-) 279 WP_147797449.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27007.51 Da        Isoelectric Point: 8.1958

>NTDB_id=334066 FWK45_RS07925 WP_011608614.1 1685302..1686009(-) (pilD) [Histophilus somni strain UOC-KLM-ATR-04]
MIYLAYMLFGGLCGLWVYLYVRQFSAQINKQVYSTFCEIFPENAPHLMPMSILRRKKCGHFSMYFLCGGLWCNICLNFPQ
NIYVGLWLACCGYLIFCLVLVDWLYQLVSQTLCQALFILGLLGAYQGISPLTLEQSLIGSLSGFSVFYLIYIVAKLFYRY
EALGRGDYWLMLGLGSFISWTKLPLLIFLACLTGLIYVVFNARDKKTIFIPFAPFLCLSTIIVYLLNFLREDILP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=334066 FWK45_RS07925 WP_011608614.1 1685302..1686009(-) (pilD) [Histophilus somni strain UOC-KLM-ATR-04]
ATGATTTATCTAGCTTATATGTTGTTTGGTGGACTTTGTGGGTTATGGGTTTACCTTTATGTCAGGCAATTTTCTGCTCA
GATTAATAAACAAGTTTACTCGACTTTTTGCGAAATTTTCCCCGAAAATGCACCGCACTTGATGCCTATGTCTATCTTAC
GACGGAAAAAGTGCGGTCATTTTTCTATGTATTTTTTGTGTGGTGGCCTTTGGTGTAATATATGTTTAAATTTCCCACAA
AATATTTATGTTGGTTTATGGTTAGCATGTTGCGGTTATTTAATTTTTTGCCTTGTTTTAGTGGATTGGCTATACCAACT
CGTTTCACAAACCTTATGCCAAGCCCTATTTATTTTAGGGTTATTGGGTGCTTATCAAGGTATTAGCCCATTGACTTTGG
AGCAGTCTTTAATTGGTAGCTTATCAGGCTTTTCGGTTTTTTATCTTATTTACATTGTTGCAAAATTATTCTATCGTTAT
GAAGCTTTAGGACGTGGTGATTACTGGTTAATGTTAGGGTTAGGGAGCTTTATATCTTGGACAAAATTACCGTTGCTCAT
TTTTCTTGCCTGCCTCACAGGATTAATATATGTCGTTTTTAATGCAAGAGACAAAAAAACAATATTTATTCCTTTTGCCC
CGTTCTTATGTCTCTCAACCATTATCGTATACTTGCTTAATTTTCTAAGGGAGGATATTCTTCCTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(94-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

39.13

97.872

0.383
  pilD Haemophilus influenzae Rd KW20

36.957

97.872

0.362