Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FRD49_RS05050 Genome accession   NZ_CP042994
Coordinates   1053344..1055365 (+) Length   673 a.a.
NCBI ID   WP_032012247.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain J1A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1048344..1060365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS05025 (FRD49_05025) - 1048676..1049086 (+) 411 WP_031953066.1 GFA family protein -
  FRD49_RS05030 (FRD49_05030) - 1049138..1050373 (-) 1236 WP_032012250.1 pyridoxal phosphate-dependent aminotransferase -
  FRD49_RS05035 (FRD49_05035) - 1050582..1050761 (+) 180 WP_000139633.1 hypothetical protein -
  FRD49_RS05040 (FRD49_05040) - 1050792..1052228 (-) 1437 WP_032012249.1 diguanylate cyclase domain-containing protein -
  FRD49_RS05045 (FRD49_05045) - 1052373..1053164 (-) 792 WP_002052788.1 hypothetical protein -
  FRD49_RS05050 (FRD49_05050) uvrB 1053344..1055365 (+) 2022 WP_032012247.1 excinuclease ABC subunit UvrB Machinery gene
  FRD49_RS05055 (FRD49_05055) - 1055460..1056047 (+) 588 WP_002052730.1 lipocalin family protein -
  FRD49_RS05060 (FRD49_05060) rarD 1056156..1057103 (+) 948 WP_079376984.1 EamA family transporter RarD -
  FRD49_RS05065 (FRD49_05065) - 1057320..1058777 (+) 1458 WP_002052743.1 glyceraldehyde-3-phosphate dehydrogenase -
  FRD49_RS05070 (FRD49_05070) - 1058927..1059661 (+) 735 WP_032012245.1 hypothetical protein -
  FRD49_RS05075 (FRD49_05075) - 1059673..1060347 (+) 675 WP_212264475.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77219.94 Da        Isoelectric Point: 5.2607

>NTDB_id=333971 FRD49_RS05050 WP_032012247.1 1053344..1055365(+) (uvrB) [Acinetobacter nosocomialis strain J1A]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGVEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAK
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADRITD
SMQNAIDETERRRAKQIEFNELHGITPRSAVRQAVKEIDTGEVLSDDQIDEKILEQAQALSADDRHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=333971 FRD49_RS05050 WP_032012247.1 1053344..1055365(+) (uvrB) [Acinetobacter nosocomialis strain J1A]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
AAATGGCGTCGAAAAAGGTTTTCGTAATCAGTTACTTTTGGGCGTGACTGGTTCCGGTAAGACCTATACCATGGCAAACG
TGATTGCCCAAACACAGCGACCAACCATTGTGATGGCGCACAATAAGACATTAGCAGCCCAGCTTTATGGTGAATTTAAA
GCCTTCTTCCCAAATAATGCAGTTGAATACTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCTTC
AGATACATTTATTGAAAAAGATGCAGCAATTAATGACCATATTGACCAGATGCGTTTATCTGCAACACGTGCCTTGTTAG
AGCGTCGTGATGCAATTATTGTAGCTTCTGTTTCTGCTATTTATGGTTTGGGTGACCCAAATGCCTATATGCAAATGTTA
TTGCATGTGGTTCAGGGTGACCGAGTGAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACCCGTAATGA
GCTTGAATTTTTACGTGGTACTTATCGAATTCGTGGCGAAATTATTGATATCTTCCCGGCAGAATCTGACCAACACGCAA
TTCGTATTGAACTTTTTGATGATGAAGTAGATTCAATTCGTTGGTTTGATCCACTCACCGGTAAAATGGTGCGCAAAGTA
CCACGTGTTACGATTTATCCGAAAAGTCATTATGTAACGCCAAAAGACAACTTAACGCGTGCTATTGATACCATTAAGGA
TGAACTTCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTGCTTGAGGCTCAGCGTATCGAACAGCGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGTTATACCAATGGTATTGAAAACTACTCTCGTCATTTATCAGGCCGTCCAGCA
GGTGAAGCACCACCGACATTATTTGATTATGTACCGGACGATGCTTTACTTATTATTGATGAGTCACATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCACGTAAAGAAAACTTGGTGAATTATGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAACGTATTGTTCCGACCACTATTTTTGTGAGTGCAACGCCAGCCAAA
TACGAGTTGGAGAAGTCAGAACAAGTGGTTGAGCAGGTCGTTCGTCCTACAGGTTTGATTGATCCTGAAATTGAAGTTCG
CCCAGTACTTACTCAAGTCGATGATGTTCTTTCTGAAATTAATATTCGTAAGAACTTAAATGAACGTGTATTGGTGACGA
CTTTAACAAAACGTATGGCGGAAGATTTAACATCTTATTTAAAAGAATATGGTGTTAAGGTCGCTTATTTGCACTCGGAT
ATTGATACAGTTGAACGTGTCAAAATTATTCATGAGTTACGTACAGGCGTATTTGATGTTTTGGTCGGTATTAACTTACT
TCGTGAAGGCTTAGATATGCCAGAGGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAGGGCTTCTTACGTTCAGAAC
GTTCACTTATTCAGACCATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAGGCAATTTTATATGCAGATAGAATTACCGAC
TCTATGCAAAATGCAATTGATGAGACAGAACGCCGTAGAGCTAAACAAATCGAGTTTAACGAGCTGCATGGTATTACACC
ACGTAGTGCAGTCCGTCAGGCCGTGAAAGAAATTGATACGGGTGAAGTGCTTTCAGATGATCAAATTGATGAGAAAATAT
TGGAGCAGGCACAAGCACTAAGTGCTGATGACCGTCATATTCTTTCTGACCCTAAATTGTTCAGTAAGCATATTACTAAG
CTTGAGAAAGAAATGTTAAAGGCGTCTAAAGATCTACAATTTGAGCAAGCGGCTCGTATTCGTGATGAAATCGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(553-593)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.698

99.406

0.574
  uvrB Streptococcus pneumoniae R6

57.698

99.406

0.574
  uvrB Streptococcus pneumoniae D39

57.698

99.406

0.574