Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FWK62_RS08670 Genome accession   NZ_CP042993
Coordinates   1852729..1854810 (-) Length   693 a.a.
NCBI ID   WP_132994794.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1847729..1859810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK62_RS08665 (FWK62_08665) murI 1851856..1852659 (-) 804 WP_132994793.1 glutamate racemase -
  FWK62_RS08670 (FWK62_08670) recG 1852729..1854810 (-) 2082 WP_132994794.1 ATP-dependent DNA helicase RecG Machinery gene
  FWK62_RS08675 (FWK62_08675) spoT 1854810..1856933 (-) 2124 WP_132994795.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FWK62_RS08680 (FWK62_08680) rpoZ 1857014..1857286 (-) 273 WP_011609609.1 DNA-directed RNA polymerase subunit omega -
  FWK62_RS08685 (FWK62_08685) gmk 1857341..1857967 (-) 627 WP_012341379.1 guanylate kinase -
  FWK62_RS08690 (FWK62_08690) - 1858076..1858876 (-) 801 Protein_1697 phosphorylcholine transferase LicD -
  FWK62_RS08695 (FWK62_08695) - 1858878..1859576 (-) 699 WP_132994796.1 NTP transferase domain-containing protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77733.45 Da        Isoelectric Point: 8.8037

>NTDB_id=333938 FWK62_RS08670 WP_132994794.1 1852729..1854810(-) (recG) [Histophilus somni strain UOC-KLM-ATR-014]
MGGQFLDAIPLTSLSGVGAAIAEKLGRIGLFSLQDLLFHLPIRYEDRTRITPIIDLRIDQHATIEGIVQTCDIQFGRRPV
LVVTLSDGTAKIALRFFNFNAGMKNGFQLGARVKAFGEIKRGRFMAEIHHPEYEIIRDNRPLQLAETLTPIYATTEGLKQ
NTLRKLTEQALVLLEKMPLAELLPRAFNPHDFSLKQAIYVLHRPPPDISLELLEQGKHPAQLRLIFEELLAHNLAMQKVR
CGSQHFSALPLRYQTALKQNFLDLLPYQPTNAQQRVVAEIEYDLGRSFPMMRLVQGDVGSGKTLVVALAALIAIDNGKQV
ALMAPTEILAEQHTANFQHWFEPLGIKVGCLTGKVKGKSRQATLEEISQGSIQMVVGTHALFQDDVKFAELVLVVIDEQH
RFGVHQRLMLREKGKYAGIYPHQLIMTATPIPRTLAMVAYADLDISIIDELPPGRTPIQTIAVSEERRTEIVARVYNACV
NEKRQAYWVCTLIDESEVLEAQAAESIAEDLQKALPVLRIGLIHGRMKVSEKQEVMRQFKNAELNLLVATTVIEVGVDVP
NASLMIIENAERLGLAQLHQLRGRVGRGSTASYCVLMYKSPLSKVSRKRLEVMRSSQDGFFISEQDLEIRGPGEVLGTKQ
TGVAEFKVADLIRDRKMLPTVQHYARLLITRSPKLADDLIQRWLKNKEIYTNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=333938 FWK62_RS08670 WP_132994794.1 1852729..1854810(-) (recG) [Histophilus somni strain UOC-KLM-ATR-014]
ATGGGTGGACAATTCTTAGACGCTATTCCACTTACTTCTTTGTCGGGTGTCGGTGCCGCAATAGCAGAAAAATTAGGTAG
AATTGGGCTTTTTAGCCTGCAAGATCTTCTGTTTCATTTGCCTATTCGTTATGAAGATCGTACCCGTATTACCCCTATTA
TTGATCTTCGTATTGATCAACATGCGACAATTGAAGGAATAGTACAAACTTGTGATATTCAATTTGGTCGTCGTCCAGTT
CTTGTGGTGACGCTTTCTGACGGTACTGCCAAAATTGCCTTACGCTTTTTTAATTTTAATGCAGGTATGAAAAATGGCTT
TCAGCTTGGAGCGAGGGTGAAAGCCTTTGGGGAAATTAAGCGAGGTCGATTTATGGCTGAAATTCATCACCCTGAGTATG
AAATTATTCGTGATAATAGACCTCTTCAGTTAGCAGAAACGCTCACCCCAATTTATGCGACAACGGAAGGCTTGAAGCAA
AATACATTACGAAAGTTGACTGAGCAGGCATTAGTGTTGCTAGAAAAAATGCCATTAGCGGAATTATTGCCTAGAGCTTT
TAATCCCCATGATTTTAGTTTAAAACAGGCCATTTACGTTTTACATCGCCCACCACCAGATATTTCTTTGGAATTGTTGG
AGCAAGGAAAACACCCTGCACAGTTACGTTTAATTTTTGAAGAATTATTAGCACATAATCTTGCTATGCAAAAAGTGCGG
TGCGGATCTCAACATTTTTCAGCTTTACCCTTACGTTATCAAACAGCATTGAAGCAAAATTTTCTTGATTTATTGCCATA
TCAACCGACAAATGCACAACAAAGAGTTGTTGCTGAAATTGAATATGATCTGGGACGTTCTTTCCCAATGATGCGTTTGG
TACAAGGCGATGTTGGCTCCGGTAAAACTTTAGTTGTTGCTTTAGCTGCATTAATTGCTATTGATAACGGTAAACAGGTA
GCACTCATGGCACCGACTGAAATTTTGGCAGAGCAACATACTGCAAATTTCCAACATTGGTTTGAACCGTTAGGAATAAA
AGTGGGTTGTTTGACAGGAAAAGTAAAAGGCAAATCTCGTCAAGCTACATTGGAGGAGATATCCCAAGGTAGTATACAAA
TGGTTGTTGGTACTCATGCTTTGTTTCAAGATGATGTCAAGTTTGCCGAACTGGTATTAGTTGTTATTGATGAACAACAT
CGCTTTGGTGTACATCAACGCCTGATGTTGCGTGAAAAAGGAAAGTATGCCGGTATTTATCCACATCAATTAATTATGAC
TGCAACACCTATTCCTCGTACATTGGCGATGGTAGCCTATGCAGATTTAGATATTTCAATTATTGATGAGTTACCTCCGG
GAAGAACACCAATTCAAACTATTGCGGTATCTGAAGAACGCAGAACCGAAATCGTCGCTAGGGTGTATAATGCTTGTGTT
AATGAAAAACGCCAAGCGTATTGGGTTTGTACTTTGATTGATGAAAGTGAAGTATTAGAAGCCCAAGCAGCAGAAAGTAT
TGCAGAGGATCTACAAAAAGCCTTGCCGGTACTACGGATTGGTTTGATACATGGCAGAATGAAAGTGAGTGAAAAGCAAG
AAGTAATGAGGCAATTTAAAAATGCTGAATTGAATTTGTTGGTCGCTACAACAGTTATTGAAGTCGGGGTTGATGTACCT
AATGCGAGTTTAATGATTATTGAAAATGCGGAACGATTAGGTTTGGCACAATTACATCAATTGCGTGGTCGGGTTGGGCG
TGGTAGTACGGCATCCTATTGTGTTTTAATGTATAAATCACCTTTGAGTAAAGTGTCGAGAAAACGTTTAGAAGTAATGC
GTTCAAGTCAAGATGGCTTCTTTATTTCTGAGCAAGATTTAGAAATTCGTGGACCGGGAGAAGTTTTAGGTACCAAACAG
ACGGGTGTTGCAGAGTTTAAAGTGGCTGATTTAATACGAGATCGTAAAATGCTGCCTACTGTTCAACATTATGCCCGTCT
ATTAATTACACGATCTCCAAAGTTAGCAGATGACCTCATTCAGCGTTGGCTTAAAAATAAAGAAATTTATACCAATGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-171)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(291-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.889

97.403

0.476
  recG Bacillus subtilis subsp. subtilis str. 168

39.13

96.248

0.377
  recG/mmsA Streptococcus pneumoniae R6

38.831

96.248

0.374
  recG/mmsA Streptococcus pneumoniae R36A

38.831

96.248

0.374

Multiple sequence alignment