Detailed information NTG0333758

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EO082_RS02415
• Genome accession: NZ_CP034967
• Coordinates: 492715..493587 (-)
• Length: 290 a.a.
• NCBI ID: WP_164535951.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain ZfB1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 487715..498587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EO082_RS02390 (EO082_02405)	secA	487847..490567 (+)	2721	WP_164535949.1	preprotein translocase subunit SecA	-
EO082_RS02395 (EO082_02410)	mutT	490642..491046 (+)	405	WP_042053534.1	8-oxo-dGTP diphosphatase MutT	-
EO082_RS02400 (EO082_02415)	yacG	491123..491317 (-)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
EO082_RS02405 (EO082_02420)	zapD	491327..492049 (-)	723	WP_005336141.1	cell division protein ZapD	-
EO082_RS02410 (EO082_02425)	coaE	492087..492701 (-)	615	WP_164535950.1	dephospho-CoA kinase	-
EO082_RS02415 (EO082_02430)	pilD	492715..493587 (-)	873	WP_164535951.1	prepilin peptidase	Machinery gene
EO082_RS02420 (EO082_02435)	pilC	493649..494890 (-)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
EO082_RS02425 (EO082_02440)	pilB	495134..496840 (-)	1707	WP_164535952.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
EO082_RS02430 (EO082_02445)	-	496844..497248 (-)	405	WP_272953589.1	pilin	-
EO082_RS02435 (EO082_02455)	nadC	497564..498427 (-)	864	WP_164535953.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32159.48 Da
• Isoelectric Point: 6.9478

>NTDB_id=333758 EO082_RS02415 WP_164535951.1 492715..493587(-) (pilD) [Aeromonas veronii strain ZfB1]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFAPDEEATAPERYNLMVPRSACPRCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=333758 EO082_RS02415 WP_164535951.1 492715..493587(-) (pilD) [Aeromonas veronii strain ZfB1]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCATGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCAGCTACTTCG
CCCCTGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCGCTGTGGCCACGCC
ATCACTGCGCTTGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTAGCCATGGTCATAACGCCGGGCTGGGGTA
CGTTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCTGGTGGTTTCGTGCCGCTGGCAGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGCGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.49	98.621	0.597
pilD	Vibrio campbellii strain DS40M4	56.446	98.966	0.559
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	49.624	91.724	0.455