Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FWK55_RS01580 Genome accession   NZ_CP042990
Coordinates   327835..329916 (+) Length   693 a.a.
NCBI ID   WP_075294181.1    Uniprot ID   A0A9Q6Z000
Organism   Histophilus somni strain UOC-KLM-ATR-011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 322835..334916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK55_RS01555 (FWK55_01555) - 323069..323767 (+) 699 WP_075294185.1 NTP transferase domain-containing protein -
  FWK55_RS01560 (FWK55_01560) - 323769..324569 (+) 801 WP_135026518.1 phosphorylcholine transferase LicD -
  FWK55_RS01565 (FWK55_01565) gmk 324678..325304 (+) 627 WP_075294183.1 guanylate kinase -
  FWK55_RS01570 (FWK55_01570) rpoZ 325359..325631 (+) 273 WP_011609609.1 DNA-directed RNA polymerase subunit omega -
  FWK55_RS01575 (FWK55_01575) spoT 325712..327835 (+) 2124 WP_136122265.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FWK55_RS01580 (FWK55_01580) recG 327835..329916 (+) 2082 WP_075294181.1 ATP-dependent DNA helicase RecG Machinery gene
  FWK55_RS01585 (FWK55_01585) murI 329986..330789 (+) 804 WP_075294180.1 glutamate racemase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77700.38 Da        Isoelectric Point: 9.1192

>NTDB_id=333727 FWK55_RS01580 WP_075294181.1 327835..329916(+) (recG) [Histophilus somni strain UOC-KLM-ATR-011]
MGGQFLDAIPLTSLSGVGAAIAEKLGRIGLFSLQDLLFHLPIRYEDRTRITPIIDLRIDQHATIEGIVQTCDIQLGRRPV
LVVTLSDGTAKIALRFFNFNAGMKNGFQLGARVKAFGEIKRGRFMAEIHHPEYEIIRDNRPLQLAETLTPIYATTEGLKQ
NTLRKLTEQALVLLEKMPLAELLPRAFNPHDFSLKQAIYVLHRPPPDISLELLGQGKHPAQLRLIFEELLAHNLAMQKVR
CGSQHFSALPLRYQTALKQNFLDLLPYQPTNAQQRVVAEIEYDLGRSFPMMRLVQGDVGSGKTLVVALAALTAIDNGKQV
ALMAPTEILAEQHTANFQRWFEPLGIRVGCLTGKVKGKSRQATLEEISQGNIQMVVGTHALFQDDVKFAELVLVVIDEQH
RFGVHQRLMLREKGKYAGIYPHQLIMTATPIPRTLAMVAYADLDTSIIDELPPGRTPIQTIAVSEERRTEIVARVYNACV
NEKRQAYWVCTLIDESEVLEAQAAESIAEDLQKALPVLRIGLIHGRMKVSEKQEVMRQFKNAELNLLVATTVIEVGVDVP
NASLMIIENAERLGLAQLHQLRGRVGRGSTASYCVLMYKSPLSKVSRKRLEVMRSSQDGFFISEQDLEIRGPGEVLGTKQ
TGVAEFKVADLIRDRKMLPTVQHYARLLITRSPKLADDLIQRWLKHKEIYTNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=333727 FWK55_RS01580 WP_075294181.1 327835..329916(+) (recG) [Histophilus somni strain UOC-KLM-ATR-011]
ATGGGTGGACAATTCTTAGACGCTATTCCACTTACTTCTTTGTCGGGTGTCGGTGCCGCAATAGCAGAAAAATTAGGTAG
AATTGGGCTTTTTAGCCTGCAAGATCTTCTGTTTCATTTGCCTATTCGTTATGAAGATCGTACCCGTATTACCCCTATTA
TTGATCTTCGTATTGATCAACATGCGACAATTGAAGGAATAGTACAAACTTGTGATATTCAATTGGGTCGTCGTCCAGTT
CTTGTGGTGACGCTTTCTGACGGTACTGCCAAAATTGCCTTACGCTTTTTTAATTTTAATGCAGGTATGAAAAATGGCTT
TCAGCTTGGAGCGAGGGTGAAAGCCTTTGGGGAAATTAAGCGAGGTCGATTTATGGCTGAAATTCATCACCCTGAGTATG
AAATTATTCGTGATAATAGACCTCTTCAGTTAGCAGAAACGCTCACCCCAATTTATGCGACAACGGAAGGCTTGAAGCAA
AATACATTACGAAAGTTGACTGAGCAGGCATTAGTGTTGCTAGAAAAAATGCCATTAGCGGAATTATTGCCTAGAGCTTT
TAATCCTCATGATTTTAGTTTAAAACAGGCTATTTACGTTTTACATCGCCCACCACCAGATATTTCTTTGGAATTGTTGG
GGCAAGGAAAACACCCTGCACAGTTACGTTTAATTTTTGAAGAATTATTAGCACATAATCTTGCTATGCAAAAAGTGCGG
TGCGGATCTCAACATTTTTCAGCTTTACCCTTACGTTATCAAACAGCATTGAAGCAAAATTTTCTTGATTTATTGCCATA
TCAACCGACAAATGCACAACAAAGAGTTGTTGCTGAAATTGAATATGATCTGGGACGTTCTTTCCCAATGATGCGTTTGG
TACAAGGCGATGTTGGCTCCGGTAAAACTTTAGTTGTTGCCTTAGCTGCATTAACTGCTATTGATAACGGTAAACAGGTA
GCACTCATGGCACCGACTGAAATTTTGGCAGAGCAACATACTGCAAATTTCCAACGTTGGTTTGAACCGTTAGGAATAAG
AGTGGGTTGTTTGACAGGAAAAGTAAAAGGCAAATCTCGTCAAGCCACATTGGAGGAGATATCCCAAGGCAATATACAAA
TGGTTGTTGGTACTCATGCCTTGTTTCAAGATGATGTCAAGTTTGCCGAACTGGTATTAGTTGTTATTGATGAACAACAT
CGCTTTGGTGTACATCAACGCCTGATGTTGCGTGAAAAAGGAAAGTATGCCGGTATTTATCCACATCAATTAATTATGAC
TGCAACACCTATTCCTCGTACATTGGCAATGGTAGCCTATGCAGATTTAGATACTTCAATTATTGATGAGTTACCTCCGG
GAAGAACACCAATTCAAACTATTGCGGTATCTGAAGAACGCAGAACCGAAATCGTCGCTAGGGTGTATAATGCTTGTGTT
AATGAAAAACGCCAAGCGTATTGGGTTTGTACTTTGATTGATGAAAGTGAAGTATTAGAAGCCCAAGCAGCAGAAAGTAT
TGCAGAGGATCTACAAAAAGCCTTGCCGGTACTACGGATTGGTTTGATACATGGCAGAATGAAAGTGAGTGAAAAGCAAG
AAGTAATGAGGCAATTTAAAAATGCTGAATTGAATTTGTTGGTTGCTACAACAGTAATTGAAGTCGGGGTTGATGTACCT
AATGCGAGTTTAATGATTATTGAAAATGCGGAACGATTAGGTTTGGCACAATTACATCAATTGCGTGGTCGGGTTGGGCG
TGGTAGTACGGCATCCTATTGTGTTTTAATGTATAAATCACCTTTGAGTAAAGTGTCGAGAAAACGTTTAGAAGTAATGC
GTTCAAGTCAAGATGGCTTCTTTATTTCTGAGCAAGATTTAGAAATTCGTGGACCGGGAGAAGTTTTAGGTACCAAACAG
ACGGGTGTTGCAGAGTTTAAAGTGGCTGATTTAATACGAGATCGTAAAATGCTGCCTACTGTTCAACATTATGCCCGTCT
ATTAATTACACGATCTCCAAAGTTAGCAGATGACCTCATTCAGCGTTGGCTTAAACATAAAGAAATTTATACCAATGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(291-405)

RecG wedge domain (RecG_wedge)

(15-171)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6Z000

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.741

97.403

0.475
  recG Bacillus subtilis subsp. subtilis str. 168

38.981

96.248

0.375
  recG/mmsA Streptococcus pneumoniae R6

38.681

96.248

0.372
  recG/mmsA Streptococcus pneumoniae R36A

38.681

96.248

0.372

Multiple sequence alignment