Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EO217_RS10230 Genome accession   NZ_CP034949
Coordinates   1718066..1718578 (-) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium strain NM213     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1713066..1723578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EO217_RS10210 (EO217_10200) dnaB 1713589..1714956 (-) 1368 WP_002288373.1 replicative DNA helicase -
  EO217_RS10215 (EO217_10205) rplI 1715230..1715682 (-) 453 WP_002288372.1 50S ribosomal protein L9 -
  EO217_RS10220 (EO217_10210) - 1715688..1717661 (-) 1974 WP_002288371.1 DHH family phosphoesterase -
  EO217_RS10225 (EO217_10215) rpsR 1717804..1718040 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  EO217_RS10230 (EO217_10220) ssb 1718066..1718578 (-) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  EO217_RS10235 (EO217_10225) rpsF 1718628..1718927 (-) 300 WP_002288366.1 30S ribosomal protein S6 -
  EO217_RS10240 (EO217_10230) gyrA 1719163..1721634 (-) 2472 WP_002333197.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=333653 EO217_RS10230 WP_002288368.1 1718066..1718578(-) (ssb) [Enterococcus faecium strain NM213]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=333653 EO217_RS10230 WP_002288368.1 1718066..1718578(-) (ssb) [Enterococcus faecium strain NM213]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment