Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   EO946_RS18905 Genome accession   NZ_CP034943
Coordinates   3673428..3673547 (+) Length   39 a.a.
NCBI ID   WP_003222023.1    Uniprot ID   A0A9Q4EZF5
Organism   Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3668428..3678547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EO946_RS18880 (EO946_18875) - 3668599..3669882 (+) 1284 WP_003222013.1 pitrilysin family protein -
  EO946_RS18885 (EO946_18880) albG 3669879..3670580 (+) 702 WP_003222015.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  EO946_RS18890 (EO946_18885) - 3670717..3672072 (-) 1356 WP_003222017.1 YncE family protein -
  EO946_RS18900 (EO946_18895) rapF 3672299..3673444 (+) 1146 WP_003222022.1 response regulator aspartate phosphatase RapF Regulator
  EO946_RS18905 (EO946_18900) phrF 3673428..3673547 (+) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  EO946_RS18910 (EO946_18905) speB 3673700..3674572 (-) 873 WP_003222025.1 agmatinase -
  EO946_RS18915 (EO946_18910) speE 3674633..3675463 (-) 831 WP_003222027.1 spermidine synthase -
  EO946_RS18920 (EO946_18915) - 3675665..3677740 (+) 2076 WP_003222029.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4226.12 Da        Isoelectric Point: 10.4997

>NTDB_id=333618 EO946_RS18905 WP_003222023.1 3673428..3673547(+) (phrF) [Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633]
MKLKSKLLLSCLALSTVFIATNIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=333618 EO946_RS18905 WP_003222023.1 3673428..3673547(+) (phrF) [Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGCACTGTTTTCATCGCAACAAATATTGCAAATGCACC
TACCCACCAAATTGAAGTTGCACAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment