Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FWK49_RS02100 | Genome accession | NZ_CP042988 |
| Coordinates | 456631..457974 (+) | Length | 447 a.a. |
| NCBI ID | WP_136122076.1 | Uniprot ID | - |
| Organism | Histophilus somni strain UOC-KLM-ATR-09 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 451631..462974
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FWK49_RS02075 (FWK49_02075) | - | 452131..452802 (-) | 672 | WP_011608565.1 | trimeric intracellular cation channel family protein | - |
| FWK49_RS02080 (FWK49_02080) | - | 452963..453550 (-) | 588 | WP_011608566.1 | thymidine kinase | - |
| FWK49_RS02085 (FWK49_02085) | tsaD | 453612..454640 (-) | 1029 | WP_011608567.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| FWK49_RS02090 (FWK49_02090) | dprA | 454876..455982 (+) | 1107 | WP_075294326.1 | DNA-processing protein DprA | Machinery gene |
| FWK49_RS02095 (FWK49_02095) | rsmD | 455965..456567 (-) | 603 | WP_011608569.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| FWK49_RS02100 (FWK49_02100) | pilA | 456631..457974 (+) | 1344 | WP_136122076.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| FWK49_RS02105 (FWK49_02105) | murJ | 458137..459708 (-) | 1572 | WP_075294324.1 | murein biosynthesis integral membrane protein MurJ | - |
| FWK49_RS02110 (FWK49_02110) | rpsT | 459986..460249 (+) | 264 | WP_011608572.1 | 30S ribosomal protein S20 | - |
| FWK49_RS02115 (FWK49_02115) | typA | 460311..462161 (-) | 1851 | WP_012341568.1 | translational GTPase TypA | - |
Sequence
Protein
Download Length: 447 a.a. Molecular weight: 49778.36 Da Isoelectric Point: 4.5612
>NTDB_id=333617 FWK49_RS02100 WP_136122076.1 456631..457974(+) (pilA) [Histophilus somni strain UOC-KLM-ATR-09]
MSEEKKKGRFWSWLGLGQKTEDPISEQQPEQQSGQQESVASEQESTSNIEQVIKEPEHIDDTSSDLVLSAHLQEQEVKEY
SLHERELSQNTVIEIESAVEKTDIFIEEDTTYQAINKEQREETTITSVKEVIPQEQEKPAENGFFSRLVKGLLKTKQNIG
IGFRSLFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLIQHASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNS
KKPYVILMVGVNGVGKTTTIGKLANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSASVIFDAMQS
AVARNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDKTAPHEIMLTLDSGTGQNAISQAKLFNEAVGLTGISLTKLDG
TAKGGVIFAIADQFNLPIRYIGVGEKIDDLRPFQADEFIDALFVQKE
MSEEKKKGRFWSWLGLGQKTEDPISEQQPEQQSGQQESVASEQESTSNIEQVIKEPEHIDDTSSDLVLSAHLQEQEVKEY
SLHERELSQNTVIEIESAVEKTDIFIEEDTTYQAINKEQREETTITSVKEVIPQEQEKPAENGFFSRLVKGLLKTKQNIG
IGFRSLFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLIQHASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNS
KKPYVILMVGVNGVGKTTTIGKLANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSASVIFDAMQS
AVARNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDKTAPHEIMLTLDSGTGQNAISQAKLFNEAVGLTGISLTKLDG
TAKGGVIFAIADQFNLPIRYIGVGEKIDDLRPFQADEFIDALFVQKE
Nucleotide
Download Length: 1344 bp
>NTDB_id=333617 FWK49_RS02100 WP_136122076.1 456631..457974(+) (pilA) [Histophilus somni strain UOC-KLM-ATR-09]
ATGTCAGAAGAAAAGAAAAAAGGTAGATTTTGGTCTTGGTTAGGATTGGGGCAGAAAACAGAAGATCCGATATCAGAACA
GCAACCGGAGCAACAATCAGGACAACAGGAAAGTGTTGCAAGCGAGCAAGAATCTACTTCGAATATAGAGCAGGTTATAA
AAGAACCAGAGCATATTGATGACACTTCATCAGACTTGGTTTTATCCGCTCATTTACAGGAGCAAGAGGTAAAAGAATAC
TCACTTCATGAACGGGAACTGTCTCAAAATACTGTAATAGAAATAGAAAGTGCGGTTGAAAAAACAGATATTTTTATTGA
AGAGGATACAACATATCAGGCTATCAATAAGGAGCAGCGAGAGGAAACAACGATTACATCGGTTAAAGAAGTAATACCGC
AAGAACAAGAAAAACCGGCTGAAAATGGTTTTTTTAGTCGTTTAGTCAAAGGATTATTAAAAACCAAGCAAAATATCGGT
ATCGGTTTCCGCAGTTTGTTTTTGGGCAAGAAAATTGATGACGAGTTATTTGAGGAGTTAGAAGAACAACTATTGATCGC
TGATATCGGTGTGCCAACTACGACAAAAATCATCAATAATTTAATTCAGCATGCAAGCCGTAAACAATTGCAAGAGGCAG
ATTTACTTTATCAACAACTTAAAGTGGAATTAGCCGATATTTTAAAACCGGTCGAGCAACCTTTACAACTTGATAACAGT
AAAAAACCTTATGTTATCTTGATGGTTGGTGTAAATGGTGTGGGTAAAACCACTACAATCGGCAAATTGGCTAATCAATT
CCAAAGGCAAGGCAAATCCGTTATGTTGGCGGCAGGAGATACGTTCCGTGCTGCGGCTGTTGAGCAGCTTCAAGTTTGGG
GAGAACGTAACCAGATTCCTGTTATTGCACAAAGTACAGGTTCAGATTCTGCTTCTGTCATTTTTGATGCTATGCAATCG
GCAGTGGCACGTAATATTGATGTGCTTATTGCGGATACGGCTGGGCGTTTGCAGAATAAAAATAACCTGATGGATGAGTT
GAAAAAAATTGTTCGTGTGATAAAAAAATGTGATAAAACAGCACCGCATGAAATCATGCTAACTCTTGATAGTGGGACGG
GACAAAATGCAATTAGTCAAGCGAAATTGTTCAATGAAGCGGTAGGATTAACGGGTATTAGTCTAACCAAGTTGGATGGA
ACAGCAAAAGGCGGTGTTATTTTTGCGATTGCAGATCAATTTAATTTACCTATTCGCTATATTGGTGTCGGTGAGAAAAT
CGATGATTTACGCCCATTCCAAGCAGATGAATTTATTGACGCACTTTTTGTACAAAAAGAGTAA
ATGTCAGAAGAAAAGAAAAAAGGTAGATTTTGGTCTTGGTTAGGATTGGGGCAGAAAACAGAAGATCCGATATCAGAACA
GCAACCGGAGCAACAATCAGGACAACAGGAAAGTGTTGCAAGCGAGCAAGAATCTACTTCGAATATAGAGCAGGTTATAA
AAGAACCAGAGCATATTGATGACACTTCATCAGACTTGGTTTTATCCGCTCATTTACAGGAGCAAGAGGTAAAAGAATAC
TCACTTCATGAACGGGAACTGTCTCAAAATACTGTAATAGAAATAGAAAGTGCGGTTGAAAAAACAGATATTTTTATTGA
AGAGGATACAACATATCAGGCTATCAATAAGGAGCAGCGAGAGGAAACAACGATTACATCGGTTAAAGAAGTAATACCGC
AAGAACAAGAAAAACCGGCTGAAAATGGTTTTTTTAGTCGTTTAGTCAAAGGATTATTAAAAACCAAGCAAAATATCGGT
ATCGGTTTCCGCAGTTTGTTTTTGGGCAAGAAAATTGATGACGAGTTATTTGAGGAGTTAGAAGAACAACTATTGATCGC
TGATATCGGTGTGCCAACTACGACAAAAATCATCAATAATTTAATTCAGCATGCAAGCCGTAAACAATTGCAAGAGGCAG
ATTTACTTTATCAACAACTTAAAGTGGAATTAGCCGATATTTTAAAACCGGTCGAGCAACCTTTACAACTTGATAACAGT
AAAAAACCTTATGTTATCTTGATGGTTGGTGTAAATGGTGTGGGTAAAACCACTACAATCGGCAAATTGGCTAATCAATT
CCAAAGGCAAGGCAAATCCGTTATGTTGGCGGCAGGAGATACGTTCCGTGCTGCGGCTGTTGAGCAGCTTCAAGTTTGGG
GAGAACGTAACCAGATTCCTGTTATTGCACAAAGTACAGGTTCAGATTCTGCTTCTGTCATTTTTGATGCTATGCAATCG
GCAGTGGCACGTAATATTGATGTGCTTATTGCGGATACGGCTGGGCGTTTGCAGAATAAAAATAACCTGATGGATGAGTT
GAAAAAAATTGTTCGTGTGATAAAAAAATGTGATAAAACAGCACCGCATGAAATCATGCTAACTCTTGATAGTGGGACGG
GACAAAATGCAATTAGTCAAGCGAAATTGTTCAATGAAGCGGTAGGATTAACGGGTATTAGTCTAACCAAGTTGGATGGA
ACAGCAAAAGGCGGTGTTATTTTTGCGATTGCAGATCAATTTAATTTACCTATTCGCTATATTGGTGTCGGTGAGAAAAT
CGATGATTTACGCCCATTCCAAGCAGATGAATTTATTGACGCACTTTTTGTACAAAAAGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50.151 |
74.049 |
0.371 |