Detailed information NTG0333592

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: FWK48_RS07990
• Genome accession: NZ_CP042987
• Coordinates: 1746539..1747783 (+)
• Length: 414 a.a.
• NCBI ID: WP_136121709.1
• Uniprot ID: -
• Organism: Histophilus somni strain UOC-KLM-ATR-08
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1741539..1752783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FWK48_RS07975 (FWK48_07975)	pilB	1742784..1744175 (-)	1392	WP_136121732.1	GspE/PulE family protein	Machinery gene
FWK48_RS07980 (FWK48_07980)	tig	1744558..1745856 (+)	1299	WP_136121710.1	trigger factor	-
FWK48_RS07985 (FWK48_07985)	clpP	1745942..1746523 (+)	582	WP_075293629.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	-
FWK48_RS07990 (FWK48_07990)	clpX	1746539..1747783 (+)	1245	WP_136121709.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
FWK48_RS07995 (FWK48_07995)	ilvD	1748180..1750015 (-)	1836	WP_136121849.1	dihydroxy-acid dehydratase	-
FWK48_RS08000 (FWK48_08000)	-	1750188..1751738 (-)	1551	WP_012341083.1	exopolyphosphatase	-

Sequence

Protein

• Length: 414 a.a.
• Molecular weight: 46010.76 Da
• Isoelectric Point: 4.5932

>NTDB_id=333592 FWK48_RS07990 WP_136121709.1 1746539..1747783(+) (clpX) [Histophilus somni strain UOC-KLM-ATR-08]
MTKEKELHCSFCGKEQKEVDKLIAGTSGYICNECIELCHDMLANADDIEEIDEEFQEQEPKLPTPHEIRAHLDDYVIGQD
YAKKVLAVAVYNHYKRLRSEKNTSEVELGKSNILLIGPTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCDYDIEKAQQGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASIPPQGGRKHPQQEMLRVDTSK
ILFICGGAFAGLDKIIEKRTNTGGKGIGFGADVRIDEEKVSLTELFKQVEPDDLMKFGLIPEFIGRLPVIAPLSELDEEA
LVKILTEPKNALTKQYQVLFSLENIELEFTQEALIAMAKKALARKTGARGLRSIVETLLLDTMYDLPSIENLQKVIVEEE
TVTENKAPVLKFNS

Nucleotide

• Length: 1245 bp

>NTDB_id=333592 FWK48_RS07990 WP_136121709.1 1746539..1747783(+) (clpX) [Histophilus somni strain UOC-KLM-ATR-08]
ATGACAAAAGAAAAAGAATTACATTGCTCTTTTTGTGGTAAGGAACAAAAAGAAGTAGATAAATTAATTGCAGGCACATC
TGGTTATATTTGTAATGAGTGTATTGAATTATGTCATGACATGTTAGCTAATGCGGATGACATCGAAGAAATTGATGAAG
AATTTCAAGAGCAAGAGCCTAAATTACCGACACCACATGAAATTCGTGCACATTTAGATGATTATGTCATAGGTCAAGAT
TATGCTAAAAAAGTATTAGCTGTGGCGGTGTATAATCATTATAAACGTTTACGCAGTGAAAAAAATACTTCTGAGGTTGA
ATTGGGCAAAAGTAATATTTTGCTTATCGGCCCGACAGGCAGTGGCAAGACTTTATTGGCACAAACGTTAGCTCGTATGC
TCAATGTTCCCTTTGCAATGGCAGATGCAACAACTTTAACTGAAGCGGGATATGTTGGTGAAGATGTTGAAAATGTCTTG
CAAAAATTATTACAAAATTGTGATTATGATATAGAGAAAGCTCAACAAGGTATTATCTATATTGATGAAATTGATAAGAT
TACACGTAAGTCTGAAAATCCTTCTATTACTCGTGATGTATCAGGCGAAGGTGTACAGCAGGCTTTACTAAAATTAGTTG
AAGGAACGGTAGCTTCTATTCCTCCACAAGGCGGACGAAAGCATCCTCAACAAGAAATGTTGCGTGTGGACACCTCTAAG
ATTTTATTTATTTGTGGCGGTGCTTTTGCCGGTTTAGATAAAATTATTGAGAAAAGAACGAATACTGGTGGCAAAGGTAT
TGGTTTTGGTGCTGATGTTCGTATTGATGAAGAGAAAGTCAGTTTAACCGAATTATTTAAGCAAGTTGAACCTGATGATT
TAATGAAATTTGGCTTAATACCGGAGTTTATCGGTCGTTTACCTGTTATTGCACCTTTAAGCGAACTGGATGAGGAGGCT
TTGGTAAAAATTTTAACTGAGCCGAAAAATGCCCTAACTAAGCAATATCAAGTTTTATTCAGCTTAGAAAATATTGAATT
AGAATTTACCCAAGAAGCATTGATTGCAATGGCGAAAAAAGCACTAGCTCGTAAAACAGGTGCCAGAGGTTTGCGATCTA
TTGTTGAAACCCTATTGCTTGATACTATGTATGATCTCCCTTCTATTGAAAACTTACAGAAAGTTATAGTGGAAGAAGAA
ACAGTCACCGAAAATAAAGCGCCAGTATTGAAGTTCAATAGCTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (316-393)

• ClpX C4-type zinc finger (zf-C4_ClpX) (7-43)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.135	100	0.594
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.68	98.068	0.536