Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FWK48_RS01580 Genome accession   NZ_CP042987
Coordinates   327886..329967 (+) Length   693 a.a.
NCBI ID   WP_136121511.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 322886..334967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK48_RS01555 (FWK48_01555) - 323120..323818 (+) 699 WP_136121514.1 NTP transferase domain-containing protein -
  FWK48_RS01560 (FWK48_01560) - 323820..324620 (+) 801 WP_136121513.1 phosphorylcholine transferase LicD -
  FWK48_RS01565 (FWK48_01565) gmk 324729..325355 (+) 627 WP_012341379.1 guanylate kinase -
  FWK48_RS01570 (FWK48_01570) rpoZ 325410..325682 (+) 273 WP_011609609.1 DNA-directed RNA polymerase subunit omega -
  FWK48_RS01575 (FWK48_01575) spoT 325763..327886 (+) 2124 WP_136121512.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FWK48_RS01580 (FWK48_01580) recG 327886..329967 (+) 2082 WP_136121511.1 ATP-dependent DNA helicase RecG Machinery gene
  FWK48_RS01585 (FWK48_01585) murI 330037..330840 (+) 804 WP_075321171.1 glutamate racemase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77721.39 Da        Isoelectric Point: 8.8037

>NTDB_id=333560 FWK48_RS01580 WP_136121511.1 327886..329967(+) (recG) [Histophilus somni strain UOC-KLM-ATR-08]
MGGQFLDAIPLTSLSGVGAAIAEKLGRIGLFSLQDLLFHLPIRYEDRTRITPIIDLRIDQHATIEGIVQTCDIQFGRRPV
LVVTLSDGTAKIALRFFNFNAGMKNGFQLGARVKAFGEIKRGRFMAEIHHPEYEIIRDNRPLQLAETLTPIYATTEGLKQ
NTLRKLTEQALVLLEKMPLAELLPRAFNPHDFSLKQAIYVLHRPPPDISLELLEQGKHPAQLRLIFEELLAHNLAMQKVR
CGSQHFSALPLRYQTALKQNFLDLLPYQPTNAQQRVVAEIEYDLGRSFPMMRLVQGDVGSGKTLVVALAALTAIDNGKQV
ALMAPTEILAEQHTANFQHWFEPLGIKVGCLTGKVKGKSRQATLEEISQGSIQMVVGTHALFQDDVKFAELVLVVIDEQH
RFGVHQRLMLREKGKYAGIYPHQLIMTATPIPRTLAMVAYADLDISIIDELPPGRTPIQTIAVSEERRTEIVARVYNACV
NEKRQAYWVCTLIDESEVLEAQAAESIAEDLQKALPVLRIGLIHGRMKVSEKQEVMRQFKNAELNLLVATTVIEVGVDVP
NASLMIIENAERLGLAQLHQLRGRVGRGSTASYCVLMYKSPLSKVSRKRLEVMRSSQDGFFISEQDLEIRGPGEVLGTKQ
TGVAEFKVADLIRDRKMLPTVQHYARLLITRSPKLADDLIQRWLKNKEIYTNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=333560 FWK48_RS01580 WP_136121511.1 327886..329967(+) (recG) [Histophilus somni strain UOC-KLM-ATR-08]
ATGGGTGGACAATTCTTAGACGCTATTCCACTTACTTCTTTGTCGGGTGTCGGTGCCGCAATAGCAGAAAAATTAGGTAG
AATTGGGCTTTTTAGCCTGCAAGATCTTCTGTTTCATTTGCCTATTCGTTATGAAGATCGTACCCGTATTACCCCTATTA
TTGATCTTCGTATTGATCAACATGCGACAATTGAAGGAATAGTACAAACTTGTGATATTCAATTTGGTCGTCGTCCAGTT
CTTGTGGTGACGCTTTCTGACGGTACTGCCAAAATTGCCTTACGCTTTTTTAATTTTAATGCAGGTATGAAAAATGGCTT
TCAGCTTGGAGCGAGGGTGAAAGCCTTTGGGGAAATTAAGCGTGGTCGATTTATGGCTGAAATTCATCACCCTGAGTATG
AAATTATTCGTGATAATAGACCTCTTCAGTTAGCAGAAACGCTCACCCCAATTTATGCGACAACGGAAGGCTTGAAGCAA
AATACATTACGAAAGTTGACTGAGCAGGCATTAGTGTTGCTAGAAAAAATGCCATTAGCGGAATTATTGCCTAGAGCTTT
TAATCCTCATGATTTTAGTCTAAAACAGGCTATTTACGTTTTACATCGCCCACCACCAGATATTTCTTTGGAATTGTTGG
AGCAAGGAAAACACCCTGCACAGTTACGTTTAATTTTTGAAGAATTATTAGCACATAATCTTGCTATGCAAAAAGTGCGG
TGCGGATCTCAACATTTTTCAGCTTTACCCTTACGTTATCAAACAGCATTGAAGCAAAATTTTCTTGATTTATTGCCATA
TCAACCGACAAATGCACAACAAAGAGTTGTTGCTGAAATTGAATATGATCTGGGACGTTCTTTCCCAATGATGCGTTTGG
TACAAGGCGATGTTGGCTCGGGTAAAACTTTAGTTGTTGCCTTAGCTGCATTAACTGCTATTGATAACGGTAAACAGGTA
GCACTCATGGCACCGACTGAAATTTTGGCAGAGCAACATACTGCAAATTTCCAACATTGGTTTGAACCGTTAGGAATAAA
AGTGGGTTGTTTGACAGGAAAAGTAAAAGGCAAATCTCGTCAAGCCACATTGGAGGAGATATCCCAAGGTAGTATACAAA
TGGTTGTCGGTACTCATGCTTTGTTTCAAGATGATGTCAAGTTTGCCGAACTGGTATTAGTTGTTATTGATGAACAACAT
CGCTTTGGTGTACATCAACGCCTGATGTTGCGTGAAAAAGGAAAGTATGCCGGTATTTATCCACATCAATTAATTATGAC
TGCAACACCTATTCCTCGTACATTGGCGATGGTAGCCTATGCAGATTTAGATATTTCAATTATTGATGAGTTACCTCCGG
GAAGAACACCAATTCAAACTATTGCGGTATCTGAAGAACGTAGAACCGAAATCGTCGCTAGGGTGTATAATGCTTGTGTT
AATGAAAAACGCCAAGCGTATTGGGTTTGTACTTTGATTGATGAAAGTGAAGTATTAGAAGCCCAAGCAGCAGAAAGTAT
TGCAGAGGATCTACAAAAAGCCTTGCCGGTACTACGGATTGGTTTGATACATGGCAGAATGAAAGTGAGTGAAAAGCAAG
AAGTAATGAGGCAATTTAAAAATGCTGAATTGAATTTGTTGGTCGCTACAACAGTAATTGAAGTCGGGGTTGATGTACCT
AATGCGAGTTTAATGATTATTGAAAATGCGGAACGATTAGGTTTGGCACAATTACATCAATTGCGTGGTCGGGTTGGGCG
TGGTAGTACGGCATCCTATTGTGTTTTAATGTATAAATCACCTTTGAGTAAAGTGTCGAGAAAACGTTTAGAAGTAATGC
GTTCAAGTCAAGATGGCTTCTTTATTTCTGAGCAAGATTTAGAAATTCGTGGACCGGGAGAAGTTTTAGGTACCAAACAA
ACGGGTGTTGCAGAGTTTAAAGTGGCTGATTTAATACGAGATCGTAAAATGCTGCCTACTGTTCAACATTATGCCCGTCT
ATTAATTACACGATCTCCAAAGTTAGCAGATGACCTCATTCAGCGTTGGCTTAAAAATAAAGAAATTTATACCAATGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(291-405)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

RecG wedge domain (RecG_wedge)

(15-171)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.037

97.403

0.478
  recG Bacillus subtilis subsp. subtilis str. 168

39.13

96.248

0.377
  recG/mmsA Streptococcus pneumoniae R6

38.831

96.248

0.374
  recG/mmsA Streptococcus pneumoniae R36A

38.831

96.248

0.374