Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FWK43_RS01585 Genome accession   NZ_CP042983
Coordinates   327850..329931 (+) Length   693 a.a.
NCBI ID   WP_132994794.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 322850..334931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK43_RS01560 (FWK43_01560) - 323084..323782 (+) 699 WP_132994796.1 NTP transferase domain-containing protein -
  FWK43_RS01565 (FWK43_01565) - 323784..324584 (+) 801 Protein_303 phosphorylcholine transferase LicD -
  FWK43_RS01570 (FWK43_01570) gmk 324693..325319 (+) 627 WP_012341379.1 guanylate kinase -
  FWK43_RS01575 (FWK43_01575) rpoZ 325374..325646 (+) 273 WP_011609609.1 DNA-directed RNA polymerase subunit omega -
  FWK43_RS01580 (FWK43_01580) spoT 325727..327850 (+) 2124 WP_132994795.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FWK43_RS01585 (FWK43_01585) recG 327850..329931 (+) 2082 WP_132994794.1 ATP-dependent DNA helicase RecG Machinery gene
  FWK43_RS01590 (FWK43_01590) murI 330001..330804 (+) 804 WP_132994793.1 glutamate racemase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77733.45 Da        Isoelectric Point: 8.8037

>NTDB_id=333337 FWK43_RS01585 WP_132994794.1 327850..329931(+) (recG) [Histophilus somni strain UOC-KLM-ATR-01]
MGGQFLDAIPLTSLSGVGAAIAEKLGRIGLFSLQDLLFHLPIRYEDRTRITPIIDLRIDQHATIEGIVQTCDIQFGRRPV
LVVTLSDGTAKIALRFFNFNAGMKNGFQLGARVKAFGEIKRGRFMAEIHHPEYEIIRDNRPLQLAETLTPIYATTEGLKQ
NTLRKLTEQALVLLEKMPLAELLPRAFNPHDFSLKQAIYVLHRPPPDISLELLEQGKHPAQLRLIFEELLAHNLAMQKVR
CGSQHFSALPLRYQTALKQNFLDLLPYQPTNAQQRVVAEIEYDLGRSFPMMRLVQGDVGSGKTLVVALAALIAIDNGKQV
ALMAPTEILAEQHTANFQHWFEPLGIKVGCLTGKVKGKSRQATLEEISQGSIQMVVGTHALFQDDVKFAELVLVVIDEQH
RFGVHQRLMLREKGKYAGIYPHQLIMTATPIPRTLAMVAYADLDISIIDELPPGRTPIQTIAVSEERRTEIVARVYNACV
NEKRQAYWVCTLIDESEVLEAQAAESIAEDLQKALPVLRIGLIHGRMKVSEKQEVMRQFKNAELNLLVATTVIEVGVDVP
NASLMIIENAERLGLAQLHQLRGRVGRGSTASYCVLMYKSPLSKVSRKRLEVMRSSQDGFFISEQDLEIRGPGEVLGTKQ
TGVAEFKVADLIRDRKMLPTVQHYARLLITRSPKLADDLIQRWLKNKEIYTNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=333337 FWK43_RS01585 WP_132994794.1 327850..329931(+) (recG) [Histophilus somni strain UOC-KLM-ATR-01]
ATGGGTGGACAATTCTTAGACGCTATTCCACTTACTTCTTTGTCGGGTGTCGGTGCCGCAATAGCAGAAAAATTAGGTAG
AATTGGGCTTTTTAGCCTGCAAGATCTTCTGTTTCATTTGCCTATTCGTTATGAAGATCGTACCCGTATTACCCCTATTA
TTGATCTTCGTATTGATCAACATGCGACAATTGAAGGAATAGTACAAACTTGTGATATTCAATTTGGTCGTCGTCCAGTT
CTTGTGGTGACGCTTTCTGACGGTACTGCCAAAATTGCCTTACGCTTTTTTAATTTTAATGCAGGTATGAAAAATGGCTT
TCAGCTTGGAGCGAGGGTGAAAGCCTTTGGGGAAATTAAGCGAGGTCGATTTATGGCTGAAATTCATCACCCTGAGTATG
AAATTATTCGTGATAATAGACCTCTTCAGTTAGCAGAAACGCTCACCCCAATTTATGCGACAACGGAAGGCTTGAAGCAA
AATACATTACGAAAGTTGACTGAGCAGGCATTAGTGTTGCTAGAAAAAATGCCATTAGCGGAATTATTGCCTAGAGCTTT
TAATCCCCATGATTTTAGTTTAAAACAGGCCATTTACGTTTTACATCGCCCACCACCAGATATTTCTTTGGAATTGTTGG
AGCAAGGAAAACACCCTGCACAGTTACGTTTAATTTTTGAAGAATTATTAGCACATAATCTTGCTATGCAAAAAGTGCGG
TGCGGATCTCAACATTTTTCAGCTTTACCCTTACGTTATCAAACAGCATTGAAGCAAAATTTTCTTGATTTATTGCCATA
TCAACCGACAAATGCACAACAAAGAGTTGTTGCTGAAATTGAATATGATCTGGGACGTTCTTTCCCAATGATGCGTTTGG
TACAAGGCGATGTTGGCTCCGGTAAAACTTTAGTTGTTGCTTTAGCTGCATTAATTGCTATTGATAACGGTAAACAGGTA
GCACTCATGGCACCGACTGAAATTTTGGCAGAGCAACATACTGCAAATTTCCAACATTGGTTTGAACCGTTAGGAATAAA
AGTGGGTTGTTTGACAGGAAAAGTAAAAGGCAAATCTCGTCAAGCTACATTGGAGGAGATATCCCAAGGTAGTATACAAA
TGGTTGTTGGTACTCATGCTTTGTTTCAAGATGATGTCAAGTTTGCCGAACTGGTATTAGTTGTTATTGATGAACAACAT
CGCTTTGGTGTACATCAACGCCTGATGTTGCGTGAAAAAGGAAAGTATGCCGGTATTTATCCACATCAATTAATTATGAC
TGCAACACCTATTCCTCGTACATTGGCGATGGTAGCCTATGCAGATTTAGATATTTCAATTATTGATGAGTTACCTCCGG
GAAGAACACCAATTCAAACTATTGCGGTATCTGAAGAACGCAGAACCGAAATCGTCGCTAGGGTGTATAATGCTTGTGTT
AATGAAAAACGCCAAGCGTATTGGGTTTGTACTTTGATTGATGAAAGTGAAGTATTAGAAGCCCAAGCAGCAGAAAGTAT
TGCAGAGGATCTACAAAAAGCCTTGCCGGTACTACGGATTGGTTTGATACATGGCAGAATGAAAGTGAGTGAAAAGCAAG
AAGTAATGAGGCAATTTAAAAATGCTGAATTGAATTTGTTGGTCGCTACAACAGTTATTGAAGTCGGGGTTGATGTACCT
AATGCGAGTTTAATGATTATTGAAAATGCGGAACGATTAGGTTTGGCACAATTACATCAATTGCGTGGTCGGGTTGGGCG
TGGTAGTACGGCATCCTATTGTGTTTTAATGTATAAATCACCTTTGAGTAAAGTGTCGAGAAAACGTTTAGAAGTAATGC
GTTCAAGTCAAGATGGCTTCTTTATTTCTGAGCAAGATTTAGAAATTCGTGGACCGGGAGAAGTTTTAGGTACCAAACAG
ACGGGTGTTGCAGAGTTTAAAGTGGCTGATTTAATACGAGATCGTAAAATGCTGCCTACTGTTCAACATTATGCCCGTCT
ATTAATTACACGATCTCCAAAGTTAGCAGATGACCTCATTCAGCGTTGGCTTAAAAATAAAGAAATTTATACCAATGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-171)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(291-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.889

97.403

0.476
  recG Bacillus subtilis subsp. subtilis str. 168

39.13

96.248

0.377
  recG/mmsA Streptococcus pneumoniae R6

38.831

96.248

0.374
  recG/mmsA Streptococcus pneumoniae R36A

38.831

96.248

0.374

Multiple sequence alignment