Detailed information NTG0332997

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ELQ88_RS09365
• Genome accession: NZ_CP034783
• Coordinates: 1575869..1578097 (+)
• Length: 742 a.a.
• NCBI ID: WP_138964712.1
• Uniprot ID: A0A5B7VVS7
• Organism: Pseudomonas sp. MPC6
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1570869..1583097

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ELQ88_RS09340 (ELQ88_09340)	-	1571935..1572594 (+)	660	WP_138964708.1	transglutaminase family protein	-
ELQ88_RS09345 (ELQ88_09345)	-	1572638..1573261 (+)	624	WP_128872146.1	glutathione S-transferase	-
ELQ88_RS09350 (ELQ88_09350)	-	1573394..1574326 (+)	933	WP_138964710.1	ABC transporter ATP-binding protein	-
ELQ88_RS09355 (ELQ88_09355)	-	1574323..1575102 (+)	780	WP_128872148.1	ABC transporter permease	-
ELQ88_RS09360 (ELQ88_09360)	-	1575214..1575732 (-)	519	WP_128872149.1	DUF2062 domain-containing protein	-
ELQ88_RS09365 (ELQ88_09365)	comA	1575869..1578097 (+)	2229	WP_138964712.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ELQ88_RS09370 (ELQ88_09370)	exbB	1578195..1578833 (+)	639	WP_168187383.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ELQ88_RS09375 (ELQ88_09375)	-	1578830..1579261 (+)	432	WP_128872151.1	biopolymer transporter ExbD	-
ELQ88_RS09380 (ELQ88_09380)	lpxK	1579261..1580271 (+)	1011	WP_138964714.1	tetraacyldisaccharide 4'-kinase	-
ELQ88_RS09385 (ELQ88_09385)	-	1580296..1580481 (+)	186	WP_007945752.1	Trm112 family protein	-
ELQ88_RS09390 (ELQ88_09390)	kdsB	1580478..1581242 (+)	765	WP_138964716.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ELQ88_RS09395 (ELQ88_09395)	-	1581242..1581706 (+)	465	WP_138964718.1	low molecular weight protein-tyrosine-phosphatase	-
ELQ88_RS09400 (ELQ88_09400)	murB	1581703..1582722 (+)	1020	WP_138964720.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 742 a.a.
• Molecular weight: 81369.65 Da
• Isoelectric Point: 10.3790

>NTDB_id=332997 ELQ88_RS09365 WP_138964712.1 1575869..1578097(+) (comA) [Pseudomonas sp. MPC6]
MRTGMMALALGLLTLRFLPVLPPVWFWLSLPVAALMLLPFRTYPLAFFLFGFSWACANAHWALDDRLPINLDGETRWVEG
RVVGLPQNGEAVVRFELADARSRREHEKVPTLLRLAWYGGPPVNSGEHWRLAVKLKRPAGLLNPHAFDYDAWLLAKRIGA
TGTVKDGVRLQETRWAWRDSIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVY
VLIAGLARYGLWPARLPWLPWACGLAFAAALGYGLLAGFDVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALNGVLLLD
PLASLQPGFWLSFAAVAVLIFIFGGRLGPWRWWHAWTRAQWLIAIGLGPILLVLGLPISLSGPLVNLLAVPWISLVVLPP
ALLGTLLLPIPYVGEGLLWLAGGLIDLLFRGLALMAGRFPAWVPAAVPWWIGALGALGALLLLMPRGVPLRLPGWPLLLL
LVFPPRQLLPEGTAEIWQLDVGQGLAILVRTRHHTLLYDAGPRFGDNDLGERVVLPTLRKLGVSALDLMLISHAHADHAG
GAQAVAKGLPVKRVLSGEPLELPVALQAEACESGRQWTWDGVQFSLWQWAAARESNPKSCVLQIEANGERLLLTGDIDTA
AERALLDSPLAVTTDWLQSPHHGSRSSSSPALLAALQPAAALISRGQGNAFGHPHPTVIARYRQRGMAIHDSAEQGAIRL
QLGQFKPAWTMREERRFWRPAP

Nucleotide

• Length: 2229 bp

>NTDB_id=332997 ELQ88_RS09365 WP_138964712.1 1575869..1578097(+) (comA) [Pseudomonas sp. MPC6]
ATGCGCACAGGGATGATGGCGCTGGCGCTGGGTCTGCTGACCCTGCGTTTTTTACCGGTACTACCGCCGGTCTGGTTTTG
GCTGTCGTTGCCGGTCGCGGCTTTGATGTTGCTGCCGTTCAGGACGTATCCATTGGCCTTTTTCCTGTTCGGCTTCAGTT
GGGCGTGCGCGAATGCGCACTGGGCGCTGGATGATCGCCTGCCGATCAATCTGGACGGTGAAACCCGTTGGGTAGAAGGG
CGGGTAGTGGGATTGCCCCAGAACGGCGAGGCGGTCGTGCGTTTCGAGTTGGCGGACGCCCGCTCGCGACGCGAGCACGA
GAAAGTCCCGACATTGTTGCGCCTGGCCTGGTACGGCGGGCCGCCGGTCAACAGCGGCGAACACTGGCGCCTGGCGGTGA
AATTGAAGCGTCCTGCCGGGCTGCTCAATCCCCATGCCTTCGATTACGACGCCTGGCTGCTGGCAAAGCGCATCGGCGCC
ACCGGGACGGTCAAGGATGGCGTACGTCTCCAGGAAACCCGATGGGCCTGGCGCGACAGTATCCGCCAACGCTTGCAGGC
GGTGGATGCCCAAGGCCGAACGGGGGCGCTGACGGCCTTGGTGCTGGGGGATGGTGCCGGGCTCAGTCGCGAGGATTGGC
AGGTGTTGCAAGACACCGGCACTGTGCATTTGCTGGTGATTTCCGGGCAGCACATCGGCTTGCTGGCGGGGCTGGTGTAC
GTGCTGATTGCCGGCCTGGCCCGTTATGGCCTGTGGCCGGCCCGCTTGCCCTGGTTGCCATGGGCCTGTGGCCTGGCCTT
CGCCGCAGCGCTCGGTTATGGCTTGCTGGCCGGCTTCGACGTGCCCGTGCGGCGGGCCTGCGTGATGATCGGCCTGGTGC
TGTTGTGGCGGCTGCGTTTTCGTCACCTTGGTGCCTGGTGGCCGTTGCTGCTGGCGCTCAACGGCGTTCTGCTGCTGGAC
CCGCTGGCGAGTCTGCAACCGGGTTTCTGGTTGTCCTTCGCGGCGGTAGCCGTGTTGATCTTCATATTCGGCGGCCGGCT
GGGGCCCTGGCGCTGGTGGCACGCCTGGACTCGCGCCCAGTGGCTGATCGCGATCGGCTTGGGCCCGATATTGCTGGTAC
TGGGCTTGCCGATCAGTCTCAGCGGGCCGCTGGTCAATCTGCTCGCCGTGCCCTGGATCAGTCTGGTGGTGCTGCCGCCA
GCGTTGCTGGGGACGCTGCTGTTGCCCATTCCTTATGTGGGCGAAGGATTGCTGTGGCTGGCGGGTGGCTTGATCGATCT
ATTGTTCAGGGGCCTTGCACTGATGGCCGGGCGTTTCCCCGCGTGGGTGCCGGCGGCGGTACCGTGGTGGATAGGGGCCC
TGGGCGCACTCGGGGCCTTGCTGTTGTTGATGCCTCGCGGGGTGCCCCTGCGCCTGCCGGGTTGGCCGCTGCTGCTGTTG
CTGGTGTTTCCACCCCGGCAACTGCTGCCGGAGGGCACGGCCGAAATCTGGCAACTCGACGTCGGCCAGGGGCTGGCCAT
CCTGGTGCGTACCCGTCATCACACGCTGCTGTATGACGCCGGGCCACGCTTCGGCGATAACGACCTGGGCGAGCGCGTGG
TGCTGCCGACGCTGCGCAAACTGGGGGTGAGCGCCCTCGACTTGATGCTGATCAGCCATGCCCATGCCGATCACGCCGGC
GGGGCGCAGGCTGTCGCCAAGGGGCTGCCGGTGAAGCGCGTACTCAGTGGCGAACCCTTGGAATTGCCCGTAGCGCTGCA
AGCCGAGGCCTGCGAGAGCGGTCGGCAATGGACCTGGGACGGTGTGCAGTTCTCGCTCTGGCAATGGGCAGCAGCCCGGG
AAAGCAATCCCAAATCCTGCGTGTTGCAGATCGAAGCCAACGGCGAGCGGCTACTGCTGACCGGTGACATCGACACCGCG
GCCGAGCGAGCCTTGCTCGACAGCCCCCTGGCGGTGACCACCGATTGGTTGCAGTCACCTCATCACGGCAGTCGCAGTTC
ATCGTCGCCGGCGCTGCTTGCCGCGTTGCAACCCGCGGCAGCGCTGATCTCCCGCGGTCAGGGCAATGCCTTCGGCCACC
CCCATCCCACGGTGATCGCGCGCTATCGACAGCGCGGCATGGCGATCCATGACAGCGCCGAACAGGGTGCCATCCGTCTG
CAACTGGGGCAGTTCAAGCCGGCATGGACAATGCGTGAGGAACGGCGTTTCTGGCGGCCTGCACCTTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-683)

• Competence protein (Competence) (200-466)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

3D structure

• AlphaFold DB: A0A5B7VVS7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.585	96.226	0.612
comA	Ralstonia pseudosolanacearum GMI1000	33.373	100	0.377