Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ELQ88_RS09370 Genome accession   NZ_CP034783
Coordinates   1578195..1578833 (+) Length   212 a.a.
NCBI ID   WP_168187383.1    Uniprot ID   -
Organism   Pseudomonas sp. MPC6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1573195..1583833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELQ88_RS09350 (ELQ88_09350) - 1573394..1574326 (+) 933 WP_138964710.1 ABC transporter ATP-binding protein -
  ELQ88_RS09355 (ELQ88_09355) - 1574323..1575102 (+) 780 WP_128872148.1 ABC transporter permease -
  ELQ88_RS09360 (ELQ88_09360) - 1575214..1575732 (-) 519 WP_128872149.1 DUF2062 domain-containing protein -
  ELQ88_RS09365 (ELQ88_09365) comA 1575869..1578097 (+) 2229 WP_138964712.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ELQ88_RS09370 (ELQ88_09370) exbB 1578195..1578833 (+) 639 WP_168187383.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ELQ88_RS09375 (ELQ88_09375) - 1578830..1579261 (+) 432 WP_128872151.1 biopolymer transporter ExbD -
  ELQ88_RS09380 (ELQ88_09380) lpxK 1579261..1580271 (+) 1011 WP_138964714.1 tetraacyldisaccharide 4'-kinase -
  ELQ88_RS09385 (ELQ88_09385) - 1580296..1580481 (+) 186 WP_007945752.1 Trm112 family protein -
  ELQ88_RS09390 (ELQ88_09390) kdsB 1580478..1581242 (+) 765 WP_138964716.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ELQ88_RS09395 (ELQ88_09395) - 1581242..1581706 (+) 465 WP_138964718.1 low molecular weight protein-tyrosine-phosphatase -
  ELQ88_RS09400 (ELQ88_09400) murB 1581703..1582722 (+) 1020 WP_138964720.1 UDP-N-acetylmuramate dehydrogenase -
  ELQ88_RS09405 (ELQ88_09405) - 1582971..1583444 (+) 474 WP_138964722.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22997.24 Da        Isoelectric Point: 7.3616

>NTDB_id=332998 ELQ88_RS09370 WP_168187383.1 1578195..1578833(+) (exbB) [Pseudomonas sp. MPC6]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVAPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKKA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=332998 ELQ88_RS09370 WP_168187383.1 1578195..1578833(+) (exbB) [Pseudomonas sp. MPC6]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCAATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGTCGTGTGGCCCCGGAACATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTCAATAAAGAGAAACTCAAGGAACTGCGCGCCAACTCGCCGTTGGGTGAGGTCCTGGCGGCGGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCACGAACTCGAACGCTACAT
CAACGCCTTGGGCACCATCGCCGCCATGGCCCCGTTGCTCGGCTTGCTCGGCACCGTATTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACGGGCATGGGCACCAACGCTGCCGTGCTGGCGGGTGGTATTTCCAAAGCACTGATCACCACCGCC
GCGGGCCTGATGGTCGGTATCCCGGCCGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTTGTGCAGGGTGACCGTGACGTGGACCTGTCCGAGGGCAAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.057

0.84

Multiple sequence alignment