Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ELQ88_RS06300 Genome accession   NZ_CP034783
Coordinates   941191..942537 (-) Length   448 a.a.
NCBI ID   WP_128870785.1    Uniprot ID   A0A1V4LTA4
Organism   Pseudomonas sp. MPC6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 936191..947537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELQ88_RS06285 (ELQ88_06285) - 936372..939488 (+) 3117 WP_138964198.1 PilC/PilY family type IV pilus protein -
  ELQ88_RS06290 (ELQ88_06290) - 939503..939904 (+) 402 WP_128870783.1 type IV pilin protein -
  ELQ88_RS06295 (ELQ88_06295) thiO 939959..941059 (+) 1101 WP_138964200.1 glycine oxidase ThiO -
  ELQ88_RS06300 (ELQ88_06300) pilR 941191..942537 (-) 1347 WP_128870785.1 sigma-54 dependent transcriptional regulator Regulator
  ELQ88_RS06305 (ELQ88_06305) pilS 942534..944123 (-) 1590 WP_138964202.1 ATP-binding protein Regulator
  ELQ88_RS06310 (ELQ88_06310) - 944113..944346 (-) 234 WP_128870787.1 PP0621 family protein -
  ELQ88_RS06315 (ELQ88_06315) - 944522..945544 (-) 1023 WP_128870788.1 outer membrane protein assembly factor BamD -
  ELQ88_RS06320 (ELQ88_06320) rluD 945696..946658 (+) 963 WP_128870789.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ELQ88_RS06325 (ELQ88_06325) pgeF 946655..947380 (+) 726 WP_138964204.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49976.15 Da        Isoelectric Point: 6.7246

>NTDB_id=332988 ELQ88_RS06300 WP_128870785.1 941191..942537(-) (pilR) [Pseudomonas sp. MPC6]
MNTSPRQKVLIVDDEPDIRELLEITLGRMNLDTFSARNVGAAQALLTRETFDLCLTDMRLPDGTGLELVHYIQQRHTQVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLSRLRELVTSALRLTAPDGARSTVDRQLLGDSLPMRNLRKHIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRANRPFIPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIETLA
IHVLKRLAAGSGQPATRLHPHALDALKSYRFPGNVRELENMLERAHTLCDNQQIEAGDLRLAEGNCAAEGGVPDLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=332988 ELQ88_RS06300 WP_128870785.1 941191..942537(-) (pilR) [Pseudomonas sp. MPC6]
TTGAACACAAGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAGCCGGACATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAATCTCGACACTTTCAGTGCCCGCAACGTAGGCGCAGCCCAGGCGCTGCTGACGCGCGAGACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCGGACGGCACCGGCCTGGAGCTGGTGCATTACATCCAGCAACGCCATACACAGGTTCCG
GTGGCAATGATTACGGCCTATGGCAGCCTTGAAACAGCGATCAACGCACTCAAGGCCGGGGCCTTCGATTTCCTGACCAA
ACCGGTGGACCTTTCCCGGCTGCGGGAACTGGTCACCAGCGCCCTGCGCCTGACCGCGCCGGACGGCGCCCGCAGCACCG
TCGATCGGCAGTTGCTGGGTGACTCATTGCCCATGCGCAACCTGCGCAAACACATCGACAAACTGGCCCGCAGTCAGGCC
CCGGTGTACATCAGCGGCGAGTCTGGCAGCGGCAAGGAACTGGTCGCGCGGCTGATCCACGAGCAGGGGCCGCGGGCCAA
CCGACCCTTTATCCCGGTGAACTGCGGGGCGATCCCCTCGGAATTGATGGAAAGCGAGTTTTTCGGCCACCGCAAAGGCA
GTTTCAGTGGCGCCATCGAGGACAAGCCCGGCCTGTTCCAGGCGGCCCATGGCGGTACGCTGTTCCTCGACGAAGTGGCT
GACTTGCCACTGGCGATGCAGGTCAAACTCCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGTGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCCACCCACAAAGACCTCGACGCTGAAGTCGCCGCCGAGCGCTTCCGCCAGG
ATTTGTACTACCGGCTGAACGTGATCGAGCTGCGGGTTCCGTCCTTGCGCGAACGTCGCGACGATATAGAGACCCTGGCC
ATCCATGTTCTCAAACGCCTGGCAGCCGGCAGCGGCCAGCCCGCCACCAGACTCCACCCACACGCCCTCGACGCGCTGAA
AAGCTATCGTTTTCCCGGCAATGTGCGGGAACTGGAGAACATGCTCGAACGGGCTCACACGCTGTGTGACAACCAACAGA
TCGAAGCCGGCGACCTGCGATTGGCCGAAGGCAACTGTGCCGCGGAGGGCGGTGTGCCGGACCTGACGCAGATCGACAAC
CTGGAGGATTATCTGGAAAACGTCGAGCGCAAACTGATCCTCCAGGCGCTGGAGGAAACCCGCTGGAACCGTACGGCGGC
GGCTCAGCGGTTGAATCTTTCGTTTCGGTCGATGCGTTATCGGCTCAAGAAGCTCGGTTTGGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V4LTA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.007

98.884

0.781
  pilR Acinetobacter baumannii strain A118

48.913

100

0.502

Multiple sequence alignment