Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ELQ88_RS06305 Genome accession   NZ_CP034783
Coordinates   942534..944123 (-) Length   529 a.a.
NCBI ID   WP_138964202.1    Uniprot ID   -
Organism   Pseudomonas sp. MPC6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 937534..949123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELQ88_RS06290 (ELQ88_06290) - 939503..939904 (+) 402 WP_128870783.1 type IV pilin protein -
  ELQ88_RS06295 (ELQ88_06295) thiO 939959..941059 (+) 1101 WP_138964200.1 glycine oxidase ThiO -
  ELQ88_RS06300 (ELQ88_06300) pilR 941191..942537 (-) 1347 WP_128870785.1 sigma-54 dependent transcriptional regulator Regulator
  ELQ88_RS06305 (ELQ88_06305) pilS 942534..944123 (-) 1590 WP_138964202.1 ATP-binding protein Regulator
  ELQ88_RS06310 (ELQ88_06310) - 944113..944346 (-) 234 WP_128870787.1 PP0621 family protein -
  ELQ88_RS06315 (ELQ88_06315) - 944522..945544 (-) 1023 WP_128870788.1 outer membrane protein assembly factor BamD -
  ELQ88_RS06320 (ELQ88_06320) rluD 945696..946658 (+) 963 WP_128870789.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ELQ88_RS06325 (ELQ88_06325) pgeF 946655..947380 (+) 726 WP_138964204.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58747.52 Da        Isoelectric Point: 7.1008

>NTDB_id=332989 ELQ88_RS06305 WP_138964202.1 942534..944123(-) (pilS) [Pseudomonas sp. MPC6]
MTAETSSPGSKQAQRLLRLYHLYRLSVGLTLVLLISSNMDNQLLKFANDDLLRTGSWLYLILNILLVVFLENTRRPAQLF
SLALTDVLLLCGLFYAGGGVASAIGNLLIVSVAISNTLLRRHIGLLIAAVGALGIVGLSLLISFSHPTSPNDYLQVGTLG
ALCFAAALLVQGLMRRLEVSESLAEQRASEVVGLEALNALILQRMRTGILVLDDQRRVQLANHGALTLLGQDGLEGHLID
DYSPTLVERLQLWRNNPTLRPQSIKVDGSGLELQPSFIALDQSPHYQILVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLHESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVAHRLDLKPWLEQFVAETRERATTR
QQIHLHIGSGDFKTLMDPNQLTQILDNLVRNGWRHSIQVHDQAQVWLELFVDRDSQLPILEVRDDGTGVAPDHQAQLFEP
FFTTSTQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=332989 ELQ88_RS06305 WP_138964202.1 942534..944123(-) (pilS) [Pseudomonas sp. MPC6]
GTGACCGCTGAGACGTCCAGTCCCGGCAGCAAACAGGCCCAGCGACTGCTGCGTCTCTATCATCTTTACCGTTTAAGCGT
CGGCCTCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCAGTTGCTGAAGTTCGCCAATGACGACTTGTTGCGCA
CTGGCAGCTGGCTGTACCTGATACTCAATATTTTGCTGGTGGTGTTTCTTGAGAACACCCGTCGCCCGGCGCAATTGTTC
AGTCTCGCGCTGACCGACGTGCTGCTGCTGTGCGGCCTGTTCTACGCCGGTGGCGGCGTGGCCAGCGCCATTGGCAATCT
GCTGATCGTGTCGGTGGCGATCAGCAACACCTTGTTGCGCCGGCATATCGGCTTGCTGATTGCCGCTGTCGGCGCGCTCG
GCATCGTCGGGCTGAGCCTGCTGATAAGCTTCAGCCACCCGACCAGCCCCAACGACTACCTGCAAGTCGGCACGCTGGGG
GCCCTGTGCTTCGCCGCAGCATTGTTGGTACAAGGCCTGATGCGGCGCCTGGAAGTCAGTGAAAGCCTGGCCGAGCAACG
GGCCAGCGAAGTGGTCGGCCTCGAAGCCCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTACTCGACG
ACCAGCGACGGGTGCAACTGGCCAACCACGGCGCGCTGACACTGCTGGGGCAGGACGGGCTTGAAGGCCATCTGATCGAT
GATTACTCGCCCACCCTGGTCGAACGCCTGCAACTGTGGCGCAACAATCCGACGCTGCGGCCCCAGAGCATTAAAGTCGA
CGGTAGTGGCCTGGAGCTGCAACCGAGCTTTATCGCCCTGGACCAAAGCCCCCATTACCAGATTCTGGTGTTTCTCGAAG
ACCTCGCCCAGATCGCCCAACAGGCCCAACAATTGAAACTCGCCGCCCTCGGCCGCCTGACAGCCGGCATTGCCCATGAA
ATACGCAATCCATTGGGTGCCATCAGTCACGCCGCGCAGCTATTACACGAATCAGAGGAACTCAATGGCGCGGATCGACG
TCTGACCCAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTAATCGAAAACGTCCTGCAACTGTCCCGTCGCCAAC
AAACCGTGGCGCATCGGCTTGACCTGAAGCCGTGGCTGGAACAGTTCGTCGCCGAAACCCGCGAGCGCGCGACCACGCGT
CAGCAGATTCACCTGCACATAGGGTCGGGCGACTTCAAAACCCTGATGGACCCGAACCAGTTGACCCAGATACTCGACAA
TCTGGTGCGCAACGGCTGGCGCCATAGCATCCAGGTCCACGACCAGGCGCAGGTCTGGCTCGAATTGTTTGTCGACCGCG
ACAGCCAGCTGCCGATTCTCGAAGTCCGGGACGATGGAACCGGCGTGGCACCGGACCATCAGGCGCAGCTGTTCGAACCG
TTCTTCACCACCAGCACCCAAGGAACGGGGCTTGGACTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGTATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605

Multiple sequence alignment