Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ELR50_RS12815 Genome accession   NZ_CP034688
Coordinates   2893780..2895117 (+) Length   445 a.a.
NCBI ID   WP_256514291.1    Uniprot ID   A0AAW6PB36
Organism   Pseudomonas citronellolis strain WXP-4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2888780..2900117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELR50_RS12790 (ELR50_12710) pgeF 2888973..2889701 (-) 729 WP_058071490.1 peptidoglycan editing factor PgeF -
  ELR50_RS12795 (ELR50_12715) rluD 2889698..2890657 (-) 960 WP_058071491.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ELR50_RS12800 (ELR50_12720) - 2890804..2891817 (+) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  ELR50_RS12805 (ELR50_12725) - 2891956..2892186 (+) 231 WP_043318040.1 PP0621 family protein -
  ELR50_RS12810 (ELR50_12730) pilS 2892179..2893768 (+) 1590 WP_269964090.1 sensor histidine kinase Regulator
  ELR50_RS12815 (ELR50_12735) pilR 2893780..2895117 (+) 1338 WP_256514291.1 sigma-54-dependent transcriptional regulator Regulator
  ELR50_RS12820 (ELR50_12740) thiO 2895162..2896271 (-) 1110 WP_269964091.1 glycine oxidase ThiO -
  ELR50_RS12825 (ELR50_12745) - 2896450..2896962 (+) 513 WP_269964092.1 GspH/FimT family protein -
  ELR50_RS12830 (ELR50_12750) - 2897112..2897633 (+) 522 WP_058071496.1 GspH/FimT family pseudopilin -
  ELR50_RS12835 (ELR50_12755) pilV 2897647..2898222 (+) 576 WP_058071497.1 type IV pilus modification protein PilV -
  ELR50_RS12840 - 2898219..2899013 (+) 795 WP_058073387.1 PilW family protein -
  ELR50_RS12845 (ELR50_12765) - 2899021..2899509 (+) 489 WP_058071499.1 pilus assembly PilX family protein -
  ELR50_RS12850 (ELR50_12770) - 2899518..2899868 (+) 351 WP_269964093.1 hypothetical protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49538.81 Da        Isoelectric Point: 5.6352

>NTDB_id=332542 ELR50_RS12815 WP_256514291.1 2893780..2895117(+) (pilR) [Pseudomonas citronellolis strain WXP-4]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAKEYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFLTKPVDLGRLRELVATALRLRSPGAEDAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVAVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LKRLASDSGLAAAQVSPEALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPQDLRFAEATGGGESGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=332542 ELR50_RS12815 WP_256514291.1 2893780..2895117(+) (pilR) [Pseudomonas citronellolis strain WXP-4]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGACGAACCGGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCAAGGAATACCTGGCCCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTCAACGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTGGCCACGGCCCTGCGCCTGCGCTCGCCGGGCGCGGAAGACGCGCCGGTGGACAACC
GCCTGCTGGGCGACTCGCCGCCCATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAACAGGGCCCGCGCAGCGAAGTGGCCTT
CGTCCCGGTGAACTGCGGCGCCATCCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGGCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAATGGCGGTACCCTGTTCCTCGACGAAGTGGCCGACCTGCCC
TTGCCGATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCAGTGGGCGGCCAGCAGGAAGTGGCGGT
GGACGTGCGCGTGCTCTGCGCCACCCACAAGGACCTGGCCGCGGAAGTCGCCGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGACATCCCGCTGCTCACCGAGCGCGTG
CTCAAGCGCCTGGCCAGCGACAGCGGCCTGGCCGCGGCGCAGGTCAGCCCCGAAGCCCTGGAAAAGCTCAAGAGCTACCG
TTTCCCGGGCAACGTGCGCGAACTGGAGAACATGCTCGAACGCGCCTACACCCTGTGCGAAGACGATGTCATCCAGCCCC
AGGACCTGCGTTTCGCCGAGGCCACCGGCGGCGGCGAAAGCGGCGAGGCCAGCCTGGCGCAGATCGACAACCTCGAGGAC
TACCTCGAAGAGATCGAGCGCAAGCTGATCATGCAGGCGCTGGAAGAAACCCGCTGGAACCGTACCGCCGCGGCCCAGCG
GCTGGGGCTGACGTTCCGTTCGATGCGCTATCGCTTGAAGAAGCTGGGGATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.764

100

0.888
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515

Multiple sequence alignment