Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ELR50_RS12810 Genome accession   NZ_CP034688
Coordinates   2892179..2893768 (+) Length   529 a.a.
NCBI ID   WP_269964090.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain WXP-4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2887179..2898768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELR50_RS12785 - 2888708..2888872 (-) 165 WP_160326832.1 hypothetical protein -
  ELR50_RS12790 (ELR50_12710) pgeF 2888973..2889701 (-) 729 WP_058071490.1 peptidoglycan editing factor PgeF -
  ELR50_RS12795 (ELR50_12715) rluD 2889698..2890657 (-) 960 WP_058071491.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ELR50_RS12800 (ELR50_12720) - 2890804..2891817 (+) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  ELR50_RS12805 (ELR50_12725) - 2891956..2892186 (+) 231 WP_043318040.1 PP0621 family protein -
  ELR50_RS12810 (ELR50_12730) pilS 2892179..2893768 (+) 1590 WP_269964090.1 sensor histidine kinase Regulator
  ELR50_RS12815 (ELR50_12735) pilR 2893780..2895117 (+) 1338 WP_256514291.1 sigma-54-dependent transcriptional regulator Regulator
  ELR50_RS12820 (ELR50_12740) thiO 2895162..2896271 (-) 1110 WP_269964091.1 glycine oxidase ThiO -
  ELR50_RS12825 (ELR50_12745) - 2896450..2896962 (+) 513 WP_269964092.1 GspH/FimT family protein -
  ELR50_RS12830 (ELR50_12750) - 2897112..2897633 (+) 522 WP_058071496.1 GspH/FimT family pseudopilin -
  ELR50_RS12835 (ELR50_12755) pilV 2897647..2898222 (+) 576 WP_058071497.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58481.53 Da        Isoelectric Point: 7.2738

>NTDB_id=332541 ELR50_RS12810 WP_269964090.1 2892179..2893768(+) (pilS) [Pseudomonas citronellolis strain WXP-4]
MAKAIPISGQQGQRILRLYHLYRLSIGLLLVLLISSDLDDRVLNVGQSALFHASCWSYLIVNILIAVLMPTPRQLLPIFL
LALFDILALCGLFYAAGGVPSGIGNLLVVAVGIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSQPTAINHYVQAGSLGA
LSFAAALLLQGLARRQQLTEHLAEERATTVANLEELNALILQRMRTGILVLDSRHRVLLANQSALGLLAQPELAGKLATE
HCPELLDSLQQWERNPSLRPPSLQAPEGGPMLQPSFIPLRRGEEQHTLVFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLQESETLDAPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQQLDLRQWLQRFTDEQREGLRGDQ
QIHLQMGGGEIQTRMDPSQLTQVLGNLVQNGLRYSARQNGSGQVWLNLFRDRDSDLPVLEVLDDGPGIAPEQMGKLFEPF
FTTESKGTGLGLYISRELCESNQARIDFKNRDEGGGSFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=332541 ELR50_RS12810 WP_269964090.1 2892179..2893768(+) (pilS) [Pseudomonas citronellolis strain WXP-4]
ATGGCTAAGGCCATCCCCATCAGCGGCCAGCAGGGGCAGCGCATCCTCCGCCTGTACCACCTGTACCGCCTGAGCATCGG
CCTGCTGCTGGTGCTGCTGATTTCCAGCGACCTCGACGACCGCGTGCTCAACGTCGGCCAGTCAGCGCTGTTCCATGCCA
GCTGCTGGAGCTACCTGATCGTCAACATCCTGATCGCCGTGCTGATGCCGACGCCGCGCCAGTTGCTGCCGATCTTCCTG
CTGGCGCTGTTCGACATCCTCGCGCTGTGCGGCCTGTTCTACGCCGCCGGCGGCGTGCCCAGCGGCATCGGCAACCTGCT
GGTGGTGGCGGTGGGCATCGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCCGTCGCCGCGATCGGCA
TGATCTACCTGACCTTCTACCTCAGCCTCAGCCAGCCCACGGCGATCAACCACTACGTCCAGGCCGGCAGCCTCGGCGCC
CTGAGCTTCGCCGCCGCGCTGCTGCTGCAGGGCCTGGCGCGGCGCCAGCAACTCACCGAGCACCTGGCCGAGGAACGCGC
CACCACCGTGGCCAACCTCGAAGAACTCAACGCCCTCATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTGGACAGCC
GGCACCGCGTGCTGCTGGCCAACCAGAGCGCCCTGGGCCTGCTGGCCCAGCCGGAACTGGCGGGCAAGCTCGCCACCGAG
CATTGCCCGGAGCTGCTCGACAGCCTGCAGCAGTGGGAGCGCAACCCCTCGCTGCGCCCGCCCAGCCTGCAGGCGCCCGA
AGGCGGCCCCATGCTGCAGCCGAGCTTCATCCCGCTGCGCCGCGGCGAGGAGCAGCACACCCTGGTGTTCCTCGAAGACA
TCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCGGCCCTGGGCCGGCTCACCGCCGGCATCGCCCACGAGATC
CGCAACCCGCTGGGCGCCATCAGCCACGCCGCGCAGCTGCTGCAGGAGTCCGAAACGCTCGACGCCCCCGACCGGCGCCT
GACGCAGATCATCCAGGACCAGTCGCGACGCATGAACCTGGTGATCGAGAACGTCCTGCAACTGTCGCGGCGACGCCAGG
CCGAGCCGCAACAGCTGGACCTCAGGCAGTGGCTGCAGCGCTTCACCGACGAGCAGCGCGAAGGCCTGCGCGGCGACCAG
CAGATCCACCTGCAAATGGGCGGCGGCGAGATCCAGACGCGCATGGACCCCAGCCAACTCACCCAGGTGCTGGGTAACCT
GGTGCAGAATGGGTTACGGTACAGTGCCCGGCAGAACGGCAGCGGCCAGGTGTGGTTGAACCTGTTCCGCGACCGGGACA
GCGACCTGCCGGTGCTGGAGGTGCTCGACGACGGCCCCGGCATCGCCCCGGAGCAGATGGGCAAGCTGTTCGAACCCTTC
TTCACCACCGAGAGCAAGGGTACCGGGCTGGGCCTGTACATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCCCGCATCGA
CTTCAAGAACCGCGACGAAGGCGGTGGCAGCTTCCGCATCACCTTCGCCCACCCGCGCAAGCAGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

73.106

99.811

0.73

Multiple sequence alignment